Wall clock time and date at job start Tue Mar 31 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47188 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.34223 * 117.00189 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00362 * 179.97438 * 12 11 10 15 15 H 1.09003 * 115.54667 * 34.33379 * 14 12 11 16 16 C 1.52996 * 117.50352 * 248.62855 * 14 12 11 17 17 C 1.52994 * 117.50177 * 180.02562 * 14 12 11 18 18 H 1.09000 * 117.50135 * 0.02562 * 17 14 12 19 19 C 1.50701 * 117.49931 * 215.00184 * 17 14 12 20 20 C 1.33352 * 125.18560 * 120.00050 * 19 17 14 21 21 C 1.38473 * 114.92797 * 179.97438 * 20 19 17 22 22 C 1.33493 * 114.88731 * 359.97438 * 21 20 19 23 23 Cl 1.73593 * 125.21113 * 180.02562 * 22 21 20 24 24 S 1.75876 * 125.19179 * 299.69664 * 19 17 14 25 25 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 27 27 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 28 28 H 1.08996 * 109.47025 * 300.00039 * 10 9 7 29 29 H 1.08997 * 109.46785 * 60.00177 * 10 9 7 30 30 H 1.09005 * 117.49427 * 359.97438 * 16 14 12 31 31 H 1.08996 * 117.50297 * 145.01684 * 16 14 12 32 32 H 1.08001 * 122.53803 * 359.96045 * 20 19 17 33 33 H 1.08003 * 122.55626 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5194 -4.9196 -0.0011 12 6 2.2505 -6.0453 -0.0018 13 8 3.4572 -5.9820 -0.0013 14 6 1.5664 -7.3880 -0.0018 15 1 0.6292 -7.4381 -0.5561 16 6 1.6869 -8.2424 1.2616 17 6 2.4549 -8.6335 -0.0019 18 1 3.5343 -8.4818 -0.0015 19 6 1.9676 -9.8358 -0.7688 20 6 2.6083 -10.4083 -1.7886 21 6 1.9668 -11.5049 -2.3393 22 6 0.8044 -11.8226 -1.7650 23 17 -0.2183 -13.1429 -2.2388 24 16 0.4708 -10.7027 -0.4504 25 1 -0.4849 -0.8401 -0.0004 26 1 0.6247 -2.5571 0.8896 27 1 0.6242 -2.5567 -0.8904 28 1 2.8721 -3.6043 -0.8905 29 1 2.8720 -3.6042 0.8895 30 1 2.2613 -7.8334 2.0928 31 1 0.8288 -8.8546 1.5389 32 1 3.5559 -10.0440 -2.1573 33 1 2.3761 -12.0612 -3.1696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786477091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:09 Heat of formation + Delta-G solvation = -49.745689 kcal Electronic energy + Delta-G solvation = -18248.058920 eV Core-core repulsion = 15005.910905 eV Total energy + Delta-G solvation = -3242.148014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41804 -38.70463 -37.52318 -36.73513 -35.83016 -33.71950 -30.25965 -29.70089 -25.86707 -24.66452 -23.87189 -22.25073 -21.37770 -20.24638 -19.99660 -18.08010 -17.46331 -16.62907 -16.43416 -16.06676 -15.99375 -14.69498 -14.18087 -14.04635 -13.75572 -13.68597 -13.41159 -13.13057 -12.78991 -12.47800 -12.28265 -11.96333 -11.69446 -11.49149 -11.39759 -11.14421 -10.95997 -10.89626 -10.72511 -10.37663 -10.18536 -9.97638 -9.82016 -8.96616 -8.85019 -8.75344 -8.42936 -6.48473 -4.19603 0.33432 0.66657 1.38199 1.82510 2.08601 2.30096 2.91228 3.39926 3.43393 3.51614 3.59382 4.11926 4.29156 4.43930 4.49773 4.85276 4.88048 5.03871 5.06324 5.29693 5.30292 5.47989 5.58970 5.67417 5.72595 5.91462 5.91906 5.92565 6.44070 6.78124 7.25291 7.29797 7.95851 8.08964 8.32433 8.74054 9.53085 10.93040 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.037267 B = 0.002251 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.157198 B =12434.963289 C =12676.129869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.054 0.946 9 C 0.011 3.989 10 C 0.082 3.918 11 O -0.353 6.353 12 C 0.488 3.512 13 O -0.514 6.514 14 C -0.149 4.149 15 H 0.138 0.862 16 C -0.139 4.139 17 C -0.057 4.057 18 H 0.143 0.857 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.155 4.155 23 Cl -0.015 7.015 24 S 0.158 5.842 25 H 0.271 0.729 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.152 0.848 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -26.676 -1.664 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.646 4.646 8 H 0.072 0.928 9 C -0.026 4.026 10 C 0.010 3.990 11 O -0.269 6.269 12 C 0.331 3.669 13 O -0.404 6.404 14 C -0.169 4.169 15 H 0.156 0.844 16 C -0.176 4.176 17 C -0.077 4.077 18 H 0.161 0.839 19 C -0.257 4.257 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.298 4.298 23 Cl 0.013 6.987 24 S 0.422 5.578 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.169 0.831 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.455 -24.945 -0.681 24.958 hybrid contribution 1.311 -1.958 -1.201 2.645 sum 1.766 -26.903 -1.882 27.026 Atomic orbital electron populations 1.70748 1.06878 1.30870 1.45746 1.25913 0.96493 1.02760 0.93375 0.83444 0.74625 0.74668 0.76911 1.21260 1.21331 1.20800 1.21844 0.94504 0.91070 1.57165 0.92814 1.19310 0.94868 0.90761 0.97653 1.23512 0.96025 0.78213 1.01292 1.86500 1.42357 1.15681 1.82354 1.22242 0.85824 0.86182 0.72699 1.90637 1.15543 1.88161 1.46055 1.21936 1.02353 0.87150 1.05436 0.84397 1.23214 1.02603 1.00534 0.91277 1.20590 0.99487 0.89060 0.98571 0.83946 1.23803 0.98693 1.01220 1.01939 1.19967 1.02447 0.96328 0.96706 1.20193 0.93777 0.98511 1.02088 1.25261 0.99276 1.00056 1.05250 1.98372 1.66041 1.43609 1.90677 1.84401 1.20956 1.22064 1.30423 0.91848 0.96200 0.96188 0.92000 0.92004 0.86597 0.87181 0.83065 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.54 13.65 55.43 0.76 -26.79 16 2 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 3 Si 1.08 25.03 29.90 -169.99 -5.08 19.95 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.61 -17.28 9.11 -34.44 -0.31 -17.60 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.01 0.29 4.66 -27.89 -0.13 0.16 16 10 C 0.08 1.83 5.40 37.16 0.20 2.03 16 11 O -0.35 -6.99 10.22 -39.24 -0.40 -7.39 16 12 C 0.49 8.25 7.74 36.00 0.28 8.53 16 13 O -0.51 -9.76 16.01 -18.76 -0.30 -10.06 16 14 C -0.15 -1.80 6.00 -91.78 -0.55 -2.35 16 15 H 0.14 1.52 8.14 -51.93 -0.42 1.10 16 16 C -0.14 -1.31 9.75 -26.76 -0.26 -1.57 16 17 C -0.06 -0.58 5.72 -91.80 -0.53 -1.10 16 18 H 0.14 1.49 7.67 -51.93 -0.40 1.09 16 19 C -0.14 -1.29 6.14 -36.01 -0.22 -1.51 16 20 C -0.12 -1.07 10.05 -41.20 -0.41 -1.48 16 21 C -0.11 -0.92 10.13 -41.16 -0.42 -1.34 16 22 C -0.15 -1.36 7.10 29.07 0.21 -1.15 16 23 Cl -0.02 -0.13 29.29 -51.86 -1.52 -1.65 16 24 S 0.16 1.36 22.16 -107.50 -2.38 -1.02 16 25 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 26 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 27 H 0.02 0.54 8.01 -51.92 -0.42 0.12 16 28 H 0.06 1.38 8.13 -51.93 -0.42 0.95 16 29 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 30 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.11 0.84 7.26 -51.93 -0.38 0.47 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -31.52 324.40 -9.92 -41.45 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -3.64 Total: -2.44 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.24 Total: -16.94 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.76 Total: -26.79 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.70 Total: -17.45 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.38 Total: -1.02 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.52 -9.92 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786477091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.299 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds