Wall clock time and date at job start Tue Mar 31 2020 07:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00376 * 2 1 4 4 H 1.48495 * 109.46923 * 240.00423 * 3 2 1 5 5 H 1.48497 * 109.46771 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47150 * 120.00082 * 3 2 1 7 7 C 1.37880 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99694 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00010 * 180.02562 * 10 9 7 12 12 O 1.21358 * 120.00102 * 0.02562 * 11 10 9 13 13 C 1.49351 * 120.00282 * 180.02562 * 11 10 9 14 14 O 1.21380 * 119.99516 * 359.97438 * 13 11 10 15 15 N 1.34775 * 120.00282 * 180.02562 * 13 11 10 16 16 C 1.39762 * 120.00050 * 185.52594 * 15 13 11 17 17 C 1.38884 * 120.06959 * 24.83810 * 16 15 13 18 18 C 1.38305 * 119.91428 * 179.72500 * 17 16 15 19 19 F 1.35103 * 119.97908 * 180.25527 * 18 17 16 20 20 C 1.38533 * 120.04562 * 0.54955 * 18 17 16 21 21 C 1.38243 * 120.13685 * 359.72596 * 20 18 17 22 22 C 1.38224 * 120.08479 * 359.97438 * 21 20 18 23 23 Cl 1.73602 * 120.02100 * 179.97438 * 22 21 20 24 24 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46926 * 60.00261 * 9 7 2 26 26 H 1.09006 * 109.47180 * 300.00006 * 9 7 2 27 27 H 0.96996 * 120.00106 * 0.02562 * 10 9 7 28 28 H 0.97004 * 119.99767 * 5.79901 * 15 13 11 29 29 H 1.08000 * 120.04201 * 359.97438 * 17 16 15 30 30 H 1.07995 * 119.93106 * 179.69899 * 20 18 17 31 31 H 1.07995 * 119.95783 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5604 -5.1051 -0.0020 13 6 2.7240 -6.0186 -0.0005 14 8 3.9174 -5.7968 0.0000 15 7 2.2748 -7.2893 -0.0015 16 6 3.1775 -8.3498 0.1156 17 6 4.4073 -8.1522 0.7301 18 6 5.2958 -9.2053 0.8493 19 9 6.4903 -9.0158 1.4515 20 6 4.9645 -10.4528 0.3463 21 6 3.7433 -10.6503 -0.2709 22 6 2.8485 -9.6033 -0.3875 23 17 1.3157 -9.8530 -1.1634 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8897 27 1 3.1565 -3.4355 -0.0002 28 1 1.3252 -7.4679 -0.0875 29 1 4.6676 -7.1785 1.1180 30 1 5.6617 -11.2726 0.4360 31 1 3.4881 -11.6239 -0.6624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787601241.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:57 Heat of formation + Delta-G solvation = -93.780616 kcal Electronic energy + Delta-G solvation = -20774.045605 eV Core-core repulsion = 16996.067668 eV Total energy + Delta-G solvation = -3777.977937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.19298 -41.11947 -39.29636 -38.02490 -36.76630 -35.42639 -34.30978 -32.44284 -30.96062 -30.03839 -27.82092 -25.20803 -23.63214 -22.87684 -21.84096 -20.12209 -19.08200 -18.15958 -17.22277 -16.88433 -16.37103 -16.22173 -15.91870 -15.65106 -15.44790 -15.08062 -14.36506 -14.32949 -14.09352 -13.76673 -13.44331 -13.22778 -12.90605 -12.25564 -12.10164 -12.01290 -11.72684 -11.43671 -11.22975 -11.06559 -10.93783 -10.88509 -10.37285 -9.55390 -9.32510 -9.09230 -8.88550 -8.53858 -8.19360 -6.26117 -4.34054 0.48729 0.69496 1.63944 1.69540 2.34495 3.04445 3.22632 3.27357 3.29220 3.49788 3.70889 3.98815 4.24327 4.28349 4.56385 4.74856 4.85376 4.99503 5.10730 5.36383 5.43592 5.61838 5.76327 5.90328 6.41026 6.76548 6.98911 7.05012 7.29768 7.45111 7.61332 7.81325 8.26736 8.45918 8.75782 9.32489 10.83844 Molecular weight = 300.05amu Principal moments of inertia in cm(-1) A = 0.023066 B = 0.003187 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.642699 B = 8782.338765 C = 9879.571603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.246 3.754 10 N -0.667 5.667 11 C 0.492 3.508 12 O -0.531 6.531 13 C 0.511 3.489 14 O -0.495 6.495 15 N -0.646 5.646 16 C 0.197 3.803 17 C -0.161 4.161 18 C 0.131 3.869 19 F -0.130 7.130 20 C -0.165 4.165 21 C -0.057 4.057 22 C -0.084 4.084 23 Cl -0.052 7.052 24 H 0.268 0.732 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.405 0.595 28 H 0.429 0.571 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.345 -21.794 0.054 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.085 0.915 9 C 0.127 3.873 10 N -0.316 5.316 11 C 0.270 3.730 12 O -0.409 6.409 13 C 0.295 3.705 14 O -0.368 6.368 15 N -0.293 5.293 16 C 0.100 3.900 17 C -0.183 4.183 18 C 0.111 3.889 19 F -0.108 7.108 20 C -0.185 4.185 21 C -0.076 4.076 22 C -0.114 4.114 23 Cl -0.023 7.023 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.240 0.760 28 H 0.269 0.731 29 H 0.186 0.814 30 H 0.164 0.836 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.016 -21.507 0.017 22.622 hybrid contribution 0.449 0.876 -0.033 0.985 sum 7.465 -20.631 -0.015 21.940 Atomic orbital electron populations 1.69948 1.06132 1.27713 1.48381 1.24934 0.94955 0.99536 0.94376 0.86410 0.79393 0.81913 0.78878 1.19928 1.21004 1.19921 1.21154 0.93490 0.90050 1.54031 0.91549 1.19385 0.88095 0.81331 0.98527 1.46441 1.12835 1.04842 1.67500 1.19525 0.87965 0.84384 0.81136 1.90758 1.15538 1.84379 1.50272 1.21080 0.89477 0.84053 0.75905 1.90714 1.16370 1.84512 1.45233 1.43343 1.11697 1.04000 1.70219 1.17174 0.90826 0.86320 0.95722 1.21352 0.93074 1.01433 1.02399 1.17485 0.81937 0.93819 0.95690 1.91541 1.42736 1.95840 1.80720 1.21070 0.98313 0.96588 1.02561 1.20693 0.91548 0.98190 0.97185 1.20699 0.91165 0.94546 1.04980 1.98395 1.28031 1.96631 1.79286 0.92202 0.94557 0.94573 0.76001 0.73091 0.81398 0.83637 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 8 H 0.07 1.65 7.60 -52.48 -0.40 1.25 16 9 C 0.25 6.21 5.43 -5.19 -0.03 6.18 16 10 N -0.67 -13.83 5.54 -61.94 -0.34 -14.17 16 11 C 0.49 9.45 7.89 -11.63 -0.09 9.36 16 12 O -0.53 -11.34 16.48 5.49 0.09 -11.25 16 13 C 0.51 8.21 7.69 -11.63 -0.09 8.12 16 14 O -0.50 -8.33 13.64 5.47 0.07 -8.26 16 15 N -0.65 -8.71 5.17 -10.28 -0.05 -8.77 16 16 C 0.20 2.39 6.43 -83.71 -0.54 1.86 16 17 C -0.16 -1.99 8.69 -39.32 -0.34 -2.33 16 18 C 0.13 1.39 7.30 -39.45 -0.29 1.11 16 19 F -0.13 -1.47 17.27 2.25 0.04 -1.43 16 20 C -0.17 -1.34 10.02 -39.47 -0.40 -1.73 16 21 C -0.06 -0.45 9.82 -39.58 -0.39 -0.84 16 22 C -0.08 -0.85 6.34 -39.30 -0.25 -1.10 16 23 Cl -0.05 -0.51 27.78 -51.86 -1.44 -1.95 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.41 7.72 7.79 -40.82 -0.32 7.40 16 28 H 0.43 5.46 7.24 -40.82 -0.30 5.17 16 29 H 0.17 2.32 5.79 -52.49 -0.30 2.01 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -29.23 303.48 -6.31 -35.54 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -2.14 Total: 7.21 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.83 Total: 7.52 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.34 Total: -47.39 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.44 Total: -1.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.23 -6.31 -35.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787601241.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.237 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds