Wall clock time and date at job start Tue Mar 31 2020 07:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.50698 * 109.47637 * 239.99941 * 2 1 3 5 5 H 1.08002 * 120.00040 * 239.99942 * 4 2 1 6 6 C 1.37882 * 119.99980 * 59.99728 * 4 2 1 7 7 N 1.31513 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99839 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47122 * 89.99715 * 8 6 4 10 10 H 1.48503 * 109.47088 * 209.99929 * 8 6 4 11 11 H 1.48497 * 109.47086 * 330.00162 * 8 6 4 12 12 N 1.46495 * 109.46976 * 119.99444 * 2 1 3 13 13 C 1.38798 * 120.00285 * 275.00089 * 12 2 1 14 14 S 1.72029 * 127.32259 * 0.02996 * 13 12 2 15 15 N 1.69482 * 96.00599 * 179.73665 * 14 13 12 16 16 C 1.29825 * 107.82422 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 121.51816 * 179.97438 * 16 15 14 18 18 C 1.38155 * 127.32548 * 179.70874 * 13 12 2 19 19 C 1.48311 * 123.06610 * 0.26364 * 18 13 12 20 20 N 1.33722 * 126.31994 * 359.68684 * 19 18 13 21 21 N 1.28565 * 109.84570 * 179.81541 * 20 19 18 22 22 N 1.28917 * 109.73817 * 0.45771 * 21 20 19 23 23 H 0.97003 * 126.42683 * 179.68151 * 22 21 20 24 24 N 1.32043 * 126.30983 * 180.02562 * 19 18 13 25 25 H 1.09004 * 109.46684 * 60.00975 * 1 2 3 26 26 H 1.09001 * 109.46619 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47554 * 300.00152 * 1 2 3 28 28 H 0.96999 * 119.99922 * 180.02562 * 7 6 4 29 29 H 0.97004 * 120.00102 * 95.00949 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3216 -1.1204 -4.0079 9 1 1.3432 -2.1618 -4.4117 10 1 2.4868 -0.1414 -5.1123 11 1 3.6296 -1.7583 -3.7120 12 7 2.0183 -0.6905 1.1962 13 6 2.1508 0.0020 2.3918 14 16 1.7987 1.6608 2.6809 15 7 2.2206 1.6482 4.3223 16 6 2.6057 0.4458 4.6244 17 17 3.1214 0.0346 6.2302 18 6 2.5878 -0.4958 3.6042 19 6 2.9997 -1.9073 3.7982 20 7 3.0022 -2.8669 2.8669 21 7 3.4218 -3.9697 3.3775 22 7 3.6953 -3.7955 4.6252 23 1 4.0246 -4.4678 5.2420 24 7 3.4256 -2.4498 4.9242 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7090 1.1612 -3.4845 29 1 2.2491 -1.6316 1.1527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824385077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:09 Heat of formation + Delta-G solvation = 151.691592 kcal Electronic energy + Delta-G solvation = -19358.291622 eV Core-core repulsion = 16085.923743 eV Total energy + Delta-G solvation = -3272.367879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.96414 -38.78933 -36.78117 -35.90960 -33.67239 -32.92951 -32.68752 -30.32111 -28.15528 -25.58133 -24.47712 -24.37556 -22.47754 -21.12204 -20.10043 -18.77637 -17.62360 -16.93641 -16.36341 -16.02804 -15.20925 -14.90072 -14.59145 -14.12327 -13.92257 -13.49079 -12.85405 -12.63160 -12.14357 -11.75220 -11.38580 -11.26321 -11.19587 -11.07086 -11.01530 -10.94379 -10.65611 -10.62981 -10.41951 -10.36148 -10.27575 -10.07141 -9.36587 -8.71551 -8.29058 -7.31364 -6.35506 -4.45574 0.97475 1.22287 1.27427 1.48409 1.91010 2.31455 2.86536 3.10202 3.15996 3.23345 3.26603 3.88846 4.02590 4.25032 4.39551 4.98663 5.27884 5.44151 5.68782 5.83743 6.32191 6.58892 6.60863 6.64197 6.65010 6.91073 7.39432 7.47425 7.62720 7.82561 8.11329 8.32265 8.59057 9.22760 10.70696 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.005164 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.749909 B = 5421.321815 C = 6713.642267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.250 3.750 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.069 0.931 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.907 3.093 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.620 5.620 13 C 0.193 3.807 14 S 0.308 5.692 15 N -0.515 5.515 16 C 0.251 3.749 17 Cl 0.000 7.000 18 C -0.272 4.272 19 C 0.308 3.692 20 N -0.312 5.312 21 N 0.009 4.991 22 N -0.308 5.308 23 H 0.465 0.535 24 N -0.296 5.296 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.019 0.981 28 H 0.269 0.731 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -4.063 11.945 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.087 0.913 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.734 3.266 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.241 5.241 13 C -0.058 4.058 14 S 0.447 5.553 15 N -0.338 5.338 16 C 0.047 3.953 17 Cl 0.028 6.972 18 C -0.298 4.298 19 C 0.027 3.973 20 N -0.191 5.191 21 N 0.013 4.987 22 N -0.155 5.155 23 H 0.319 0.681 24 N -0.140 5.140 25 H 0.120 0.880 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.190 -2.408 11.419 11.874 hybrid contribution 1.125 -2.683 0.206 2.916 sum 3.314 -5.090 11.626 13.117 Atomic orbital electron populations 1.22230 0.97020 1.00648 1.01640 1.19395 0.92050 0.93682 0.80027 0.92984 1.21064 1.33285 1.13873 0.89428 0.91300 1.24847 0.94427 0.94838 0.99156 1.69845 1.35350 1.22159 1.24538 0.86338 0.79428 0.79290 0.81549 1.20286 1.20880 1.19605 1.45842 1.59419 1.13794 1.05056 1.23346 0.92256 1.00303 0.89925 1.84541 1.66265 1.00819 1.03709 1.76214 1.29326 1.20033 1.08230 1.21135 0.96132 0.89549 0.88530 1.98397 1.88046 1.92158 1.18630 1.16210 1.30547 0.90179 0.92865 1.22467 0.94639 0.93884 0.86359 1.75257 1.21163 0.95167 1.27551 1.78256 1.07516 1.19133 0.93813 1.51009 1.46637 1.09721 1.08085 0.68130 1.79144 1.24647 0.89045 1.21166 0.87980 0.94296 0.96201 0.92137 0.73980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.28 37.16 0.34 -3.00 15 2 C 0.25 5.53 2.59 -69.09 -0.18 5.36 15 3 H 0.05 1.22 7.43 -51.93 -0.39 0.83 15 4 C -0.54 -13.20 8.73 -34.44 -0.30 -13.50 15 5 H 0.07 1.69 7.74 -52.49 -0.41 1.28 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -22.43 11.32 55.43 0.63 -21.80 15 8 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 15 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 12 N -0.62 -12.31 5.22 -54.48 -0.28 -12.59 15 13 C 0.19 3.56 7.28 -14.42 -0.10 3.45 15 14 S 0.31 5.28 22.59 -107.50 -2.43 2.85 15 15 N -0.51 -9.00 12.03 31.79 0.38 -8.62 15 16 C 0.25 4.29 7.26 -18.17 -0.13 4.16 15 17 Cl 0.00 0.00 27.05 -51.86 -1.40 -1.40 15 18 C -0.27 -4.84 5.89 -105.56 -0.62 -5.46 15 19 C 0.31 5.27 7.96 -156.43 -1.25 4.03 15 20 N -0.31 -5.38 10.32 32.11 0.33 -5.05 15 21 N 0.01 0.13 13.42 60.35 0.81 0.94 15 22 N -0.31 -3.59 8.44 60.35 0.51 -3.08 15 23 H 0.47 3.04 8.96 -331.91 -2.98 0.07 15 24 N -0.30 -4.38 10.85 32.12 0.35 -4.03 15 25 H 0.10 2.38 6.07 -51.93 -0.32 2.07 15 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 15 29 H 0.42 8.34 6.55 -40.82 -0.27 8.08 15 LS Contribution 287.75 15.07 4.34 4.34 Total: -1.00 -26.58 287.75 -8.46 -35.04 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.33 Total: 2.15 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.33 Total: -3.29 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 2.72 Total: -54.22 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -2.43 Total: 2.85 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.40 Total: -1.40 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.58 -8.46 -35.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.728 kcal (2) G-P(sol) polarization free energy of solvation -26.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds