Wall clock time and date at job start Tue Mar 31 2020 07:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.50698 * 109.47637 * 239.99941 * 2 1 3 5 5 H 1.08002 * 120.00040 * 239.99942 * 4 2 1 6 6 C 1.37882 * 119.99980 * 59.99728 * 4 2 1 7 7 N 1.31513 * 120.00045 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99839 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47122 * 89.99715 * 8 6 4 10 10 H 1.48503 * 109.47088 * 209.99929 * 8 6 4 11 11 H 1.48497 * 109.47086 * 330.00162 * 8 6 4 12 12 N 1.46495 * 109.46976 * 119.99444 * 2 1 3 13 13 C 1.38798 * 120.00285 * 275.00089 * 12 2 1 14 14 S 1.72029 * 127.32259 * 0.02996 * 13 12 2 15 15 N 1.69482 * 96.00599 * 179.73665 * 14 13 12 16 16 C 1.29825 * 107.82422 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 121.51816 * 179.97438 * 16 15 14 18 18 C 1.38155 * 127.32548 * 179.70874 * 13 12 2 19 19 C 1.48311 * 123.06610 * 0.26364 * 18 13 12 20 20 N 1.33722 * 126.31994 * 359.68684 * 19 18 13 21 21 N 1.28565 * 109.84570 * 179.81541 * 20 19 18 22 22 N 1.28917 * 109.73817 * 0.45771 * 21 20 19 23 23 H 0.97003 * 126.42683 * 179.68151 * 22 21 20 24 24 N 1.32043 * 126.30983 * 180.02562 * 19 18 13 25 25 H 1.09004 * 109.46684 * 60.00975 * 1 2 3 26 26 H 1.09001 * 109.46619 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47554 * 300.00152 * 1 2 3 28 28 H 0.96999 * 119.99922 * 180.02562 * 7 6 4 29 29 H 0.97004 * 120.00102 * 95.00949 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3216 -1.1204 -4.0079 9 1 1.3432 -2.1618 -4.4117 10 1 2.4868 -0.1414 -5.1123 11 1 3.6296 -1.7583 -3.7120 12 7 2.0183 -0.6905 1.1962 13 6 2.1508 0.0020 2.3918 14 16 1.7987 1.6608 2.6809 15 7 2.2206 1.6482 4.3223 16 6 2.6057 0.4458 4.6244 17 17 3.1214 0.0346 6.2302 18 6 2.5878 -0.4958 3.6042 19 6 2.9997 -1.9073 3.7982 20 7 3.0022 -2.8669 2.8669 21 7 3.4218 -3.9697 3.3775 22 7 3.6953 -3.7955 4.6252 23 1 4.0246 -4.4678 5.2420 24 7 3.4256 -2.4498 4.9242 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7090 1.1612 -3.4845 29 1 2.2491 -1.6316 1.1527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824385077.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:08 Heat of formation + Delta-G solvation = 134.330807 kcal Electronic energy + Delta-G solvation = -19359.044443 eV Core-core repulsion = 16085.923743 eV Total energy + Delta-G solvation = -3273.120700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.15560 -40.16798 -38.25532 -37.28666 -35.09883 -34.46679 -33.89561 -31.90186 -29.67047 -27.39912 -25.82403 -25.64853 -23.76249 -22.79956 -21.46349 -19.99200 -19.05963 -18.56134 -17.55600 -17.47781 -16.95337 -16.30239 -15.98710 -15.67547 -15.21505 -14.90727 -14.54564 -14.23636 -13.38928 -13.33333 -13.01203 -12.76270 -12.70971 -12.61419 -12.33847 -12.30558 -12.23947 -12.14363 -11.81368 -11.75274 -11.59736 -11.56918 -11.15320 -10.57488 -9.62942 -8.78405 -8.22327 -6.37687 -0.31073 -0.12433 -0.02965 0.12372 0.60988 1.29448 1.45284 1.47390 1.51713 1.57634 1.77154 2.31797 2.54045 2.77795 3.09679 3.16453 3.92052 4.11766 4.40628 4.52969 4.58906 4.88946 4.93288 5.21443 5.24947 5.56419 5.71232 5.78274 5.93029 6.08453 6.47914 6.74493 7.12145 7.33197 8.83054 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.005164 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.749909 B = 5421.321815 C = 6713.642267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.037 0.963 4 C -0.553 4.553 5 H 0.063 0.937 6 C 0.031 3.969 7 N -0.904 5.904 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.272 1.272 12 N -0.629 5.629 13 C 0.179 3.821 14 S 0.323 5.677 15 N -0.519 5.519 16 C 0.244 3.756 17 Cl 0.022 6.978 18 C -0.268 4.268 19 C 0.292 3.708 20 N -0.341 5.341 21 N 0.010 4.990 22 N -0.272 5.272 23 H 0.487 0.513 24 N -0.291 5.291 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.270 0.730 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 -4.936 13.029 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.055 0.945 4 C -0.591 4.591 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.541 5.541 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.252 5.252 13 C -0.070 4.070 14 S 0.462 5.538 15 N -0.343 5.343 16 C 0.040 3.960 17 Cl 0.050 6.950 18 C -0.294 4.294 19 C 0.009 3.991 20 N -0.219 5.219 21 N 0.014 4.986 22 N -0.124 5.124 23 H 0.346 0.654 24 N -0.137 5.137 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.779 -3.297 12.542 13.263 hybrid contribution 1.018 -2.483 0.082 2.685 sum 3.797 -5.780 12.625 14.395 Atomic orbital electron populations 1.22071 0.96705 1.00332 1.01432 1.19087 0.92219 0.92761 0.80364 0.94514 1.21338 1.33261 1.13883 0.90667 0.91839 1.25508 0.94646 0.95453 1.01447 1.69936 1.36082 1.23059 1.25036 0.85487 0.78800 0.78310 0.78668 1.19963 1.20656 1.19644 1.45465 1.61143 1.13625 1.04949 1.23466 0.92869 1.00871 0.89793 1.84478 1.65648 1.00109 1.03534 1.76214 1.29384 1.20303 1.08358 1.21243 0.96007 0.89226 0.89490 1.98400 1.87734 1.92010 1.16860 1.16372 1.29507 0.90898 0.92634 1.22408 0.95854 0.93809 0.87009 1.75248 1.22444 0.95740 1.28453 1.78207 1.07559 1.18344 0.94519 1.51012 1.44332 1.09285 1.07786 0.65369 1.79076 1.23988 0.90108 1.20479 0.89974 0.94569 0.94492 0.92069 0.74106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 9.28 71.98 0.67 -5.64 15 2 C 0.26 11.55 2.59 44.25 0.11 11.67 15 3 H 0.04 1.76 7.43 -2.38 -0.02 1.74 15 4 C -0.55 -27.36 8.73 25.60 0.22 -27.14 15 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 15 6 C 0.03 1.56 5.30 84.66 0.45 2.01 15 7 N -0.90 -46.26 11.32 21.45 0.24 -46.02 15 8 Si 0.96 40.02 29.54 68.60 2.03 42.04 15 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 10 H -0.28 -11.51 7.11 99.48 0.71 -10.80 15 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 12 N -0.63 -25.07 5.22 -326.29 -1.70 -26.78 15 13 C 0.18 6.54 7.28 83.57 0.61 7.15 15 14 S 0.32 10.89 22.59 -56.49 -1.28 9.62 15 15 N -0.52 -17.52 12.03 -53.34 -0.64 -18.16 15 16 C 0.24 8.03 7.26 85.14 0.62 8.65 15 17 Cl 0.02 0.62 27.05 -2.72 -0.07 0.55 15 18 C -0.27 -9.30 5.89 -20.47 -0.12 -9.42 15 19 C 0.29 9.58 7.96 137.36 1.09 10.68 15 20 N -0.34 -11.39 10.32 -52.33 -0.54 -11.93 15 21 N 0.01 0.26 13.42 37.02 0.50 0.76 15 22 N -0.27 -5.63 8.44 37.02 0.31 -5.32 15 23 H 0.49 4.81 8.96 -340.34 -3.05 1.76 15 24 N -0.29 -7.99 10.85 -52.29 -0.57 -8.55 15 25 H 0.08 3.88 6.07 -2.38 -0.01 3.87 15 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 28 H 0.27 13.15 8.31 -92.71 -0.77 12.38 15 29 H 0.42 16.76 6.55 -92.71 -0.61 16.15 15 Total: -1.00 -55.25 287.75 -0.47 -55.72 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -2.40 Total: 10.11 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 3.65 Total: -2.04 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -2.40 Total: -116.00 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -1.28 Total: 9.62 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.07 Total: 0.55 kcal Total: -55.25 -0.47 -55.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385077.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.052 kcal (2) G-P(sol) polarization free energy of solvation -55.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds