Wall clock time and date at job start Tue Mar 31 2020 07:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00355 * 2 1 4 4 H 1.09001 * 109.47122 * 359.97438 * 3 2 1 5 5 O 1.42905 * 109.47321 * 239.99718 * 3 2 1 6 6 C 1.50697 * 109.47576 * 119.99472 * 3 2 1 7 7 O 1.21290 * 120.00183 * 114.99673 * 6 3 2 8 8 N 1.34778 * 120.00129 * 295.00690 * 6 3 2 9 9 C 1.38895 * 120.00117 * 180.02562 * 8 6 3 10 10 N 1.29944 * 125.36429 * 179.97438 * 9 8 6 11 11 C 1.31591 * 117.13665 * 179.97438 * 10 9 8 12 12 C 1.50698 * 122.22995 * 179.97438 * 11 10 9 13 13 C 1.34658 * 115.54098 * 359.97438 * 11 10 9 14 14 S 1.76200 * 125.92922 * 179.97438 * 13 11 10 15 15 C 1.76204 * 99.99707 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99941 * 0.02562 * 15 14 13 17 17 C 1.38425 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31813 * 120.00240 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00183 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47109 * 89.99739 * 19 17 15 21 21 H 1.48502 * 109.46974 * 210.00083 * 19 17 15 22 22 H 1.48503 * 109.46861 * 330.00094 * 19 17 15 23 23 S 1.76140 * 125.36241 * 359.68724 * 9 8 6 24 24 H 1.08003 * 120.00208 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99962 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00237 * 179.97438 * 2 1 3 27 27 H 0.96696 * 114.00036 * 299.99741 * 5 3 2 28 28 H 0.97001 * 119.99819 * 359.97438 * 8 6 3 29 29 H 1.09003 * 109.47339 * 90.02419 * 12 11 10 30 30 H 1.09004 * 109.47424 * 210.02314 * 12 11 10 31 31 H 1.09001 * 109.47163 * 330.02391 * 12 11 10 32 32 H 0.96994 * 120.00099 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 -0.0005 5 8 2.8852 1.3807 -1.1668 6 6 2.9298 1.3850 1.2305 7 8 4.1377 1.4042 1.1216 8 7 2.3625 1.4349 2.4520 9 6 3.1610 1.5091 3.5861 10 7 2.7265 1.5623 4.8096 11 6 3.6293 1.6291 5.7647 12 6 3.2535 1.6960 7.2225 13 6 4.9112 1.6336 5.3526 14 16 6.3313 1.7156 6.3925 15 6 7.6045 1.6793 5.1750 16 1 7.3484 1.6210 4.1274 17 6 8.9330 1.7255 5.5613 18 7 9.2456 1.7962 6.8398 19 14 10.2829 1.6878 4.2705 20 1 10.6123 3.0758 3.8581 21 1 11.4924 1.0396 4.8381 22 1 9.8168 0.9178 3.0893 23 16 4.9221 1.5386 3.5927 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.5406 0.6728 -1.2328 28 1 1.3965 1.4197 2.5391 29 1 3.1837 0.6860 7.6265 30 1 4.0141 2.2540 7.7686 31 1 2.2907 2.1964 7.3270 32 1 10.1764 1.8282 7.1105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825137779.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:35 Heat of formation + Delta-G solvation = -27.769811 kcal Electronic energy + Delta-G solvation = -19018.477592 eV Core-core repulsion = 15811.618981 eV Total energy + Delta-G solvation = -3206.858611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.039 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48624 -38.66738 -37.06059 -34.98373 -33.60298 -32.83729 -30.60016 -27.73557 -27.02955 -25.78149 -23.53751 -21.37303 -20.88091 -19.94194 -18.41389 -17.82442 -17.16467 -16.93686 -15.91161 -15.65602 -15.24370 -15.11662 -14.73954 -14.10497 -13.85327 -13.46317 -13.21508 -12.91705 -12.69497 -12.19988 -12.06495 -11.88443 -11.40463 -11.34191 -11.27334 -11.04986 -10.62639 -10.61044 -10.27664 -10.23673 -9.65892 -9.55309 -9.09194 -8.77561 -8.68000 -7.83392 -6.61607 -6.52600 -4.29609 1.31442 1.64024 1.85678 2.35394 2.51119 2.79368 3.07047 3.09452 3.16515 3.34039 3.58554 3.96721 4.08573 4.27143 4.49414 4.52902 4.81178 5.01714 5.02980 5.18666 5.39386 5.95877 6.02091 6.09398 6.11586 6.21543 6.42373 6.45960 6.90579 7.04476 7.23338 7.31663 7.86202 8.02643 8.48731 8.86986 10.44139 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.004632 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.022258 B = 6042.860730 C = 7498.336129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.198 4.198 3 C 0.136 3.864 4 H 0.131 0.869 5 O -0.529 6.529 6 C 0.477 3.523 7 O -0.497 6.497 8 N -0.608 5.608 9 C 0.183 3.817 10 N -0.473 5.473 11 C 0.018 3.982 12 C -0.061 4.061 13 C -0.250 4.250 14 S 0.152 5.848 15 C -0.557 4.557 16 H 0.089 0.911 17 C 0.083 3.917 18 N -0.863 5.863 19 Si 0.925 3.075 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.265 1.265 23 S 0.200 5.800 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.121 0.879 27 H 0.388 0.612 28 H 0.415 0.585 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.794 -2.636 -9.628 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.217 4.217 3 C 0.073 3.927 4 H 0.149 0.851 5 O -0.334 6.334 6 C 0.262 3.738 7 O -0.371 6.371 8 N -0.258 5.258 9 C -0.188 4.188 10 N -0.194 5.194 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.487 4.487 14 S 0.402 5.598 15 C -0.706 4.706 16 H 0.107 0.893 17 C -0.128 4.128 18 N -0.496 5.496 19 Si 0.749 3.251 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.189 1.189 23 S 0.443 5.557 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.238 0.762 28 H 0.252 0.748 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.610 -2.056 -9.149 16.528 hybrid contribution 0.203 -0.588 -1.012 1.188 sum -13.407 -2.644 -10.162 17.029 Atomic orbital electron populations 1.24014 0.95395 1.02918 0.96601 1.23385 0.96908 0.98102 1.03313 1.20783 0.90989 0.97767 0.83181 0.85144 1.86637 1.51580 1.55697 1.39521 1.21793 0.90045 0.77230 0.84765 1.90733 1.14147 1.47420 1.84807 1.42375 1.09975 1.70711 1.02772 1.23775 0.94441 1.12114 0.88441 1.65809 1.38028 1.18338 0.97254 1.19037 0.85968 1.12049 0.95387 1.20118 1.01370 1.01798 0.88779 1.28783 1.04824 1.11884 1.03206 1.83072 0.88349 1.81084 1.07262 1.23272 0.92687 1.59478 0.95159 0.89330 1.25027 0.98345 0.92873 0.96602 1.70011 1.20107 1.44671 1.14789 0.86031 0.79419 0.79131 0.80504 1.19575 1.20245 1.18888 1.85838 0.98749 1.72325 0.98751 0.87348 0.87735 0.86091 0.76241 0.74813 0.91867 0.91029 0.91916 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 14.32 29.02 0.42 -0.45 16 2 C -0.20 -1.48 9.06 -36.02 -0.33 -1.80 16 3 C 0.14 1.28 3.75 -29.04 -0.11 1.17 16 4 H 0.13 0.96 7.78 -51.93 -0.40 0.55 16 5 O -0.53 -5.71 12.98 -55.09 -0.72 -6.42 16 6 C 0.48 6.57 7.12 -10.99 -0.08 6.49 16 7 O -0.50 -8.90 13.84 -14.31 -0.20 -9.10 16 8 N -0.61 -8.59 5.35 -11.78 -0.06 -8.65 16 9 C 0.18 3.48 8.40 -87.19 -0.73 2.75 16 10 N -0.47 -9.40 10.55 -9.78 -0.10 -9.50 16 11 C 0.02 0.38 6.73 -83.96 -0.57 -0.18 16 12 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 13 C -0.25 -5.76 6.67 29.47 0.20 -5.57 16 14 S 0.15 3.80 20.74 -107.50 -2.23 1.58 16 15 C -0.56 -15.19 9.26 30.80 0.29 -14.90 16 16 H 0.09 2.40 5.97 -52.48 -0.31 2.09 16 17 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 18 N -0.86 -23.75 13.22 55.47 0.73 -23.01 16 19 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.26 -5.91 7.11 56.52 0.40 -5.50 16 23 S 0.20 4.39 18.35 -107.50 -1.97 2.42 16 24 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 25 H 0.10 0.45 7.83 -52.49 -0.41 0.04 16 26 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 27 H 0.39 3.36 8.78 45.56 0.40 3.76 16 28 H 0.41 4.40 8.82 -40.82 -0.36 4.04 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.24 7.38 -51.93 -0.38 0.86 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.28 7.07 8.32 -40.82 -0.34 6.74 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -32.48 314.02 -7.79 -40.26 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.30 Total: 3.12 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -0.65 Total: -11.08 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.57 Total: -41.17 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.91 Total: -15.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -4.20 Total: 4.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.48 -7.79 -40.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825137779.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.491 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds