Wall clock time and date at job start Tue Mar 31 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48496 * 109.47064 * 270.00022 * 3 2 1 5 5 H 1.48497 * 109.47222 * 30.00255 * 3 2 1 6 6 H 1.48501 * 109.47165 * 150.00199 * 3 2 1 7 7 C 1.37884 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99675 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.51788 * 60.08991 * 9 7 2 11 11 C 1.53044 * 109.49412 * 180.16302 * 9 7 2 12 12 C 1.53037 * 109.53419 * 181.32078 * 11 9 7 13 13 C 1.53623 * 109.24106 * 298.51011 * 12 11 9 14 14 N 1.46923 * 108.54134 * 54.86310 * 13 12 11 15 15 C 1.34779 * 120.63297 * 126.36684 * 14 13 12 16 16 O 1.21621 * 120.00091 * 185.39147 * 15 14 13 17 17 C 1.47226 * 119.99965 * 5.39070 * 15 14 13 18 18 N 1.30600 * 125.53394 * 221.05104 * 17 15 14 19 19 C 1.30742 * 115.89806 * 180.02562 * 18 17 15 20 20 Cl 1.73598 * 122.12011 * 179.97438 * 19 18 17 21 21 C 1.34335 * 115.75864 * 0.27705 * 19 18 17 22 22 S 1.71068 * 109.09112 * 359.58686 * 21 19 18 23 23 C 1.46924 * 118.74005 * 306.08902 * 14 13 12 24 24 H 0.97000 * 120.00004 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46215 * 301.34440 * 11 9 7 26 26 H 1.09005 * 109.45774 * 61.31470 * 11 9 7 27 27 H 1.08994 * 109.50210 * 58.58939 * 12 11 9 28 28 H 1.09011 * 109.49345 * 178.65512 * 12 11 9 29 29 H 1.09001 * 109.74339 * 295.12098 * 13 12 11 30 30 H 1.09006 * 109.66297 * 174.55325 * 13 12 11 31 31 H 1.07999 * 125.45309 * 179.72757 * 21 19 18 32 32 H 1.08998 * 109.58971 * 173.65187 * 23 14 13 33 33 H 1.09004 * 109.58587 * 294.08034 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5582 -0.8908 11 6 2.2450 -3.6629 0.0029 12 6 1.4810 -4.9885 -0.0303 13 6 0.6036 -5.0988 1.2259 14 7 -0.2557 -3.9094 1.3015 15 6 -1.5923 -4.0344 1.4212 16 8 -2.3011 -3.0467 1.3842 17 6 -2.1943 -5.3664 1.5969 18 7 -3.2892 -5.7863 1.0219 19 6 -3.6550 -7.0072 1.3131 20 17 -5.0841 -7.7278 0.6406 21 6 -2.8584 -7.6665 2.1706 22 16 -1.5555 -6.6518 2.6169 23 6 0.3704 -2.5812 1.2502 24 1 -0.4850 0.8400 0.0004 25 1 2.8891 -3.5929 -0.8735 26 1 2.8541 -3.6175 0.9058 27 1 0.8527 -5.0242 -0.9202 28 1 2.1898 -5.8164 -0.0519 29 1 1.2351 -5.1504 2.1128 30 1 -0.0157 -5.9936 1.1633 31 1 -3.0143 -8.6764 2.5203 32 1 -0.4028 -1.8143 1.2038 33 1 0.9834 -2.4317 2.1391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:24 Heat of formation + Delta-G solvation = 7.546255 kcal Electronic energy + Delta-G solvation = -19900.285109 eV Core-core repulsion = 16692.914211 eV Total energy + Delta-G solvation = -3207.370898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28943 -39.14406 -36.88703 -36.59569 -33.54256 -31.95248 -30.74698 -29.81866 -26.97536 -25.17060 -24.43396 -22.07544 -21.52260 -19.69849 -19.22198 -18.13067 -16.97512 -16.25994 -16.11507 -15.44710 -15.21837 -14.56123 -14.37440 -13.90823 -13.76976 -13.43716 -12.83857 -12.72286 -12.42169 -12.31011 -11.98369 -11.82934 -11.31713 -11.06420 -10.98819 -10.59817 -10.53835 -10.38358 -10.30035 -10.02655 -9.87660 -9.55465 -9.21759 -9.05338 -8.80068 -8.49148 -7.96807 -6.03729 -4.13303 0.06499 0.79648 1.00832 1.97980 2.19527 3.03237 3.29722 3.37144 3.38750 3.45969 4.31965 4.40824 4.71097 4.81096 5.07227 5.26174 5.28889 5.35727 5.50847 5.84023 6.04746 6.20775 6.48859 6.54804 6.73206 6.87966 6.94843 7.06790 7.18632 7.53703 7.78254 7.86875 8.02693 8.29982 8.49893 8.90923 9.53011 11.01595 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.003975 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.165511 B = 7043.005878 C = 7580.932179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.095 3.905 14 N -0.590 5.590 15 C 0.581 3.419 16 O -0.490 6.490 17 C 0.037 3.963 18 N -0.408 5.408 19 C 0.112 3.888 20 Cl -0.010 7.010 21 C -0.278 4.278 22 S 0.229 5.771 23 C 0.114 3.886 24 H 0.265 0.735 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.192 0.808 32 H 0.126 0.874 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -17.803 5.886 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.169 4.169 13 C -0.029 4.029 14 N -0.324 5.324 15 C 0.362 3.638 16 O -0.363 6.363 17 C -0.242 4.242 18 N -0.124 5.124 19 C -0.053 4.053 20 Cl 0.018 6.982 21 C -0.420 4.420 22 S 0.483 5.517 23 C -0.005 4.005 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.144 0.856 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.868 -16.907 6.110 18.074 hybrid contribution -0.647 0.147 -0.473 0.815 sum -2.515 -16.760 5.638 17.861 Atomic orbital electron populations 1.69870 1.05756 1.27047 1.48991 1.25065 0.94881 0.99337 0.94723 0.86577 0.79778 0.83410 0.78151 1.20657 1.21159 1.19881 1.21049 0.92940 0.89925 1.52171 0.92201 1.18991 0.92620 0.92511 0.93894 0.95015 1.21642 0.98555 0.93769 1.00901 1.22002 0.98529 0.99480 0.96933 1.22088 0.93766 0.87312 0.99741 1.48445 1.03936 1.09943 1.70087 1.16734 0.83010 0.84668 0.79397 1.90903 1.60365 1.36428 1.48605 1.27860 0.95387 1.00133 1.00843 1.66149 1.11873 1.11816 1.22610 1.20447 0.94687 0.90463 0.99661 1.98395 1.35059 1.80006 1.84713 1.26476 1.01560 1.07917 1.06047 1.84126 1.20724 1.03841 1.42970 1.22511 0.98845 0.79933 0.99252 0.92487 0.92675 0.92921 0.91877 0.91779 0.90857 0.91534 0.79105 0.85577 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 11.39 55.43 0.63 -24.50 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -13.62 8.56 -34.44 -0.29 -13.92 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.06 5.10 -26.69 -0.14 -2.20 16 12 C -0.13 -1.99 6.10 -26.39 -0.16 -2.15 16 13 C 0.10 1.38 5.68 -3.49 -0.02 1.36 16 14 N -0.59 -11.35 2.97 -173.85 -0.52 -11.86 16 15 C 0.58 11.87 7.66 -12.61 -0.10 11.77 16 16 O -0.49 -12.25 16.52 5.26 0.09 -12.16 16 17 C 0.04 0.60 6.42 -14.43 -0.09 0.51 16 18 N -0.41 -7.05 10.65 -8.61 -0.09 -7.14 16 19 C 0.11 1.52 7.22 -19.39 -0.14 1.38 16 20 Cl -0.01 -0.12 29.20 -51.86 -1.51 -1.63 16 21 C -0.28 -2.87 10.93 29.36 0.32 -2.55 16 22 S 0.23 2.47 20.22 -107.50 -2.17 0.30 16 23 C 0.11 2.60 5.41 -3.71 -0.02 2.58 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.83 4.53 -37.89 -0.17 0.66 16 31 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 3.42 5.11 -51.93 -0.27 3.16 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -30.99 303.19 -8.33 -39.32 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.36 Total: -1.75 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.94 Total: -0.88 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.02 Total: -43.50 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.17 Total: 0.30 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.51 Total: -1.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.99 -8.33 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.862 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds