Wall clock time and date at job start Tue Mar 31 2020 07:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47037 * 2 1 4 4 C 1.36932 * 120.00041 * 275.27593 * 3 2 1 5 5 H 1.07998 * 120.00166 * 173.45561 * 4 3 2 6 6 C 1.38813 * 119.99944 * 353.45716 * 4 3 2 7 7 N 1.31621 * 120.00410 * 31.45169 * 6 4 3 8 8 Si 1.86807 * 119.99904 * 211.45737 * 6 4 3 9 9 H 1.48500 * 109.47264 * 84.99491 * 8 6 4 10 10 H 1.48507 * 109.46655 * 204.99618 * 8 6 4 11 11 H 1.48500 * 109.46895 * 324.99152 * 8 6 4 12 12 C 1.46502 * 119.99869 * 95.27967 * 3 2 1 13 13 C 1.50699 * 109.47065 * 269.99458 * 12 3 2 14 14 N 1.31838 * 119.65310 * 269.72753 * 13 12 3 15 15 C 1.31832 * 121.79494 * 180.27205 * 14 13 12 16 16 C 1.38354 * 120.87253 * 0.02562 * 15 14 13 17 17 Br 1.89099 * 120.39908 * 180.02562 * 16 15 14 18 18 C 1.38619 * 119.19607 * 359.97438 * 16 15 14 19 19 C 1.38720 * 119.64619 * 90.00107 * 13 12 3 20 20 O 1.35910 * 120.46628 * 359.74488 * 19 13 12 21 21 H 1.08992 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47001 * 300.00601 * 1 2 3 23 23 H 1.09001 * 109.47198 * 59.99555 * 1 2 3 24 24 H 1.08996 * 109.47155 * 239.99630 * 2 1 3 25 25 H 1.09004 * 109.47062 * 119.99681 * 2 1 3 26 26 H 0.96991 * 120.00429 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47031 * 149.99820 * 12 3 2 28 28 H 1.09001 * 109.47217 * 29.99760 * 12 3 2 29 29 H 1.08003 * 119.56188 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.81223 * 180.02562 * 18 16 15 31 31 H 0.96701 * 113.99759 * 89.99702 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1438 2.0631 -1.1808 5 1 2.4016 3.1118 -1.1741 6 6 1.9394 1.4064 -2.3866 7 7 1.0798 0.4121 -2.4571 8 14 2.8845 1.9336 -3.9092 9 1 4.2073 1.2590 -3.9291 10 1 2.1176 1.5555 -5.1234 11 1 3.0798 3.4056 -3.8856 12 6 2.3726 2.0329 1.2634 13 6 1.1602 2.7281 1.8272 14 7 0.9195 3.9836 1.5051 15 6 -0.1253 4.6340 1.9779 16 6 -1.0159 4.0169 2.8382 17 35 -2.5105 4.9623 3.5077 18 6 -0.7999 2.6970 3.2025 19 6 0.3123 2.0417 2.6842 20 8 0.5652 0.7476 3.0134 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.9373 -0.0470 -3.2995 27 1 3.1611 2.7643 1.0863 28 1 2.7245 1.2837 1.9725 29 1 -0.2876 5.6623 1.6904 30 1 -1.4788 2.1898 3.8721 31 1 1.1185 0.6427 3.7995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891777458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:06 Heat of formation + Delta-G solvation = 30.100229 kcal Electronic energy + Delta-G solvation = -17212.317557 eV Core-core repulsion = 14348.744116 eV Total energy + Delta-G solvation = -2863.573441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19770 -36.96778 -36.02345 -33.06206 -31.47722 -30.43729 -29.92656 -28.64618 -25.85955 -23.46735 -23.11069 -21.63901 -20.25655 -18.08310 -16.97243 -16.45301 -16.13028 -15.19979 -14.85984 -13.77337 -13.53109 -13.41366 -13.20295 -13.07726 -12.40355 -11.91140 -11.70201 -11.41957 -11.17828 -11.02641 -10.77405 -10.66470 -10.40595 -10.25447 -9.96636 -9.78334 -9.37552 -9.29747 -9.03820 -8.40083 -8.14323 -7.04973 -5.87355 -3.03261 1.13729 1.40141 1.66680 3.40387 3.48328 3.49227 3.87512 4.30166 4.50535 4.77517 4.95713 5.07260 5.27023 5.53546 5.57681 5.69750 5.96186 6.19354 6.31651 6.56944 6.66751 6.75027 7.02016 7.16521 7.26493 7.74406 7.78076 7.82510 8.16548 8.26948 8.35315 9.17688 9.78388 10.22019 11.15646 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.004816 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.355269 B = 5813.076362 C = 6276.920274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 N -0.573 5.573 4 C -0.249 4.249 5 H 0.084 0.916 6 C 0.004 3.996 7 N -0.881 5.881 8 Si 0.893 3.107 9 H -0.287 1.287 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.195 3.805 13 C 0.118 3.882 14 N -0.448 5.448 15 C 0.124 3.876 16 C -0.154 4.154 17 Br -0.056 7.056 18 C -0.082 4.082 19 C 0.066 3.934 20 O -0.475 6.475 21 H 0.015 0.985 22 H 0.021 0.979 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.012 0.988 26 H 0.254 0.746 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 5.438 14.485 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 N -0.290 5.290 4 C -0.378 4.378 5 H 0.102 0.898 6 C -0.195 4.195 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.214 1.214 10 H -0.221 1.221 11 H -0.205 1.205 12 C 0.066 3.934 13 C -0.025 4.025 14 N -0.159 5.159 15 C -0.036 4.036 16 C -0.237 4.237 17 Br 0.028 6.972 18 C -0.109 4.109 19 C 0.017 3.983 20 O -0.282 6.282 21 H 0.035 0.965 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.511 5.888 13.456 15.365 hybrid contribution -0.140 -0.294 -0.009 0.326 sum -4.651 5.594 13.447 15.288 Atomic orbital electron populations 1.22263 0.99045 0.98063 1.00983 1.21123 0.92838 0.83811 0.98278 1.44779 1.73541 1.10373 1.00337 1.19430 1.40380 0.95013 0.82930 0.89815 1.24802 0.98734 0.98329 0.97608 1.70316 1.30966 1.25868 1.25301 0.86404 0.80698 0.78249 0.82394 1.21391 1.22067 1.20517 1.19868 0.90723 0.94583 0.88225 1.23736 1.00509 0.88740 0.89529 1.67805 1.18412 1.09065 1.20619 1.22805 0.89091 1.00001 0.91742 1.22627 0.97962 0.96395 1.06722 1.96634 1.39214 1.74970 1.86376 1.21725 0.97614 0.92510 0.99095 1.19149 0.95222 0.85273 0.98679 1.85015 1.73052 1.20398 1.49752 0.96542 0.96035 0.89967 0.89626 0.96942 0.93610 0.91323 0.92059 0.82606 0.84377 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.66 37.16 0.36 -3.15 16 2 C 0.16 3.93 5.73 -4.04 -0.02 3.90 16 3 N -0.57 -13.84 2.52 -174.61 -0.44 -14.28 16 4 C -0.25 -6.68 9.64 -15.06 -0.15 -6.82 16 5 H 0.08 2.27 8.00 -52.49 -0.42 1.86 16 6 C 0.00 0.10 4.99 -17.43 -0.09 0.01 16 7 N -0.88 -24.51 8.35 55.49 0.46 -24.05 16 8 Si 0.89 21.42 29.65 -169.99 -5.04 16.38 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.20 3.88 5.77 -5.19 -0.03 3.85 16 13 C 0.12 2.25 6.36 -82.41 -0.52 1.73 16 14 N -0.45 -8.70 10.27 -9.33 -0.10 -8.79 16 15 C 0.12 2.05 10.94 -17.51 -0.19 1.86 16 16 C -0.15 -2.35 6.24 -39.40 -0.25 -2.60 16 17 Br -0.06 -0.70 33.73 -68.01 -2.29 -3.00 16 18 C -0.08 -1.25 9.89 -39.12 -0.39 -1.64 16 19 C 0.07 1.10 5.26 -39.08 -0.21 0.90 16 20 O -0.47 -7.11 11.51 -19.46 -0.22 -7.33 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.02 0.49 5.28 -51.92 -0.27 0.22 16 23 H 0.08 2.29 6.28 -51.93 -0.33 1.96 16 24 H 0.09 2.28 5.85 -51.93 -0.30 1.98 16 25 H 0.01 0.27 7.83 -51.93 -0.41 -0.14 16 26 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 28 H 0.06 1.05 7.24 -51.93 -0.38 0.68 16 29 H 0.16 2.21 8.06 -52.48 -0.42 1.78 16 30 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.38 3.57 9.06 45.56 0.41 3.98 16 LS Contribution 282.01 15.07 4.25 4.25 Total: -1.00 -29.75 282.01 -7.38 -37.13 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.51 Total: 1.65 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.07 Total: -47.12 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.22 Total: -7.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.29 Total: -3.00 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.75 -7.38 -37.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891777458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.227 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds