Wall clock time and date at job start Tue Mar 31 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47037 * 2 1 4 4 C 1.36932 * 120.00041 * 275.27593 * 3 2 1 5 5 H 1.07998 * 120.00166 * 173.45561 * 4 3 2 6 6 C 1.38813 * 119.99944 * 353.45716 * 4 3 2 7 7 N 1.31621 * 120.00410 * 31.45169 * 6 4 3 8 8 Si 1.86807 * 119.99904 * 211.45737 * 6 4 3 9 9 H 1.48500 * 109.47264 * 84.99491 * 8 6 4 10 10 H 1.48507 * 109.46655 * 204.99618 * 8 6 4 11 11 H 1.48500 * 109.46895 * 324.99152 * 8 6 4 12 12 C 1.46502 * 119.99869 * 95.27967 * 3 2 1 13 13 C 1.50699 * 109.47065 * 269.99458 * 12 3 2 14 14 N 1.31838 * 119.65310 * 269.72753 * 13 12 3 15 15 C 1.31832 * 121.79494 * 180.27205 * 14 13 12 16 16 C 1.38354 * 120.87253 * 0.02562 * 15 14 13 17 17 Br 1.89099 * 120.39908 * 180.02562 * 16 15 14 18 18 C 1.38619 * 119.19607 * 359.97438 * 16 15 14 19 19 C 1.38720 * 119.64619 * 90.00107 * 13 12 3 20 20 O 1.35910 * 120.46628 * 359.74488 * 19 13 12 21 21 H 1.08992 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.47001 * 300.00601 * 1 2 3 23 23 H 1.09001 * 109.47198 * 59.99555 * 1 2 3 24 24 H 1.08996 * 109.47155 * 239.99630 * 2 1 3 25 25 H 1.09004 * 109.47062 * 119.99681 * 2 1 3 26 26 H 0.96991 * 120.00429 * 180.02562 * 7 6 4 27 27 H 1.08996 * 109.47031 * 149.99820 * 12 3 2 28 28 H 1.09001 * 109.47217 * 29.99760 * 12 3 2 29 29 H 1.08003 * 119.56188 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.81223 * 180.02562 * 18 16 15 31 31 H 0.96701 * 113.99759 * 89.99702 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1438 2.0631 -1.1808 5 1 2.4016 3.1118 -1.1741 6 6 1.9394 1.4064 -2.3866 7 7 1.0798 0.4121 -2.4571 8 14 2.8845 1.9336 -3.9092 9 1 4.2073 1.2590 -3.9291 10 1 2.1176 1.5555 -5.1234 11 1 3.0798 3.4056 -3.8856 12 6 2.3726 2.0329 1.2634 13 6 1.1602 2.7281 1.8272 14 7 0.9195 3.9836 1.5051 15 6 -0.1253 4.6340 1.9779 16 6 -1.0159 4.0169 2.8382 17 35 -2.5105 4.9623 3.5077 18 6 -0.7999 2.6970 3.2025 19 6 0.3123 2.0417 2.6842 20 8 0.5652 0.7476 3.0134 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.9373 -0.0470 -3.2995 27 1 3.1611 2.7643 1.0863 28 1 2.7245 1.2837 1.9725 29 1 -0.2876 5.6623 1.6904 30 1 -1.4788 2.1898 3.8721 31 1 1.1185 0.6427 3.7995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891777458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:05 Heat of formation + Delta-G solvation = 10.342781 kcal Electronic energy + Delta-G solvation = -17213.174304 eV Core-core repulsion = 14348.744116 eV Total energy + Delta-G solvation = -2864.430188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53310 -38.23387 -37.75807 -34.48094 -33.21374 -31.76663 -31.53977 -30.25025 -27.49933 -25.24349 -24.45436 -23.17725 -22.01178 -19.30007 -18.69676 -17.94628 -17.54810 -16.83667 -16.33364 -15.53819 -15.24866 -14.86992 -14.68225 -14.37066 -13.81901 -13.73312 -13.43945 -13.14034 -12.72257 -12.53895 -12.34734 -12.33554 -12.22212 -11.83037 -11.66622 -11.36973 -11.28210 -10.56852 -10.42519 -10.16293 -9.62039 -8.91594 -7.85707 -5.05260 -0.15652 0.13247 0.45890 1.48696 1.52714 1.58726 2.47406 2.64978 3.09371 3.20889 3.49214 3.74849 3.79445 3.81699 4.30612 4.36686 4.62434 4.80682 4.84173 4.90657 5.05321 5.16323 5.26787 5.35820 5.46992 5.69457 5.88359 6.17143 6.33835 6.79331 7.00854 7.22104 7.92219 8.31137 9.16431 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.004816 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.355269 B = 5813.076362 C = 6276.920274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.174 3.826 3 N -0.592 5.592 4 C -0.255 4.255 5 H 0.071 0.929 6 C -0.042 4.042 7 N -0.906 5.906 8 Si 0.945 3.055 9 H -0.286 1.286 10 H -0.301 1.301 11 H -0.279 1.279 12 C 0.194 3.806 13 C 0.098 3.902 14 N -0.478 5.478 15 C 0.109 3.891 16 C -0.144 4.144 17 Br -0.023 7.023 18 C -0.082 4.082 19 C 0.077 3.923 20 O -0.482 6.482 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.246 0.754 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 5.862 16.667 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 N -0.312 5.312 4 C -0.384 4.384 5 H 0.089 0.911 6 C -0.238 4.238 7 N -0.552 5.552 8 Si 0.775 3.225 9 H -0.213 1.213 10 H -0.228 1.228 11 H -0.204 1.204 12 C 0.067 3.933 13 C -0.044 4.044 14 N -0.189 5.189 15 C -0.051 4.051 16 C -0.226 4.226 17 Br 0.061 6.939 18 C -0.110 4.110 19 C 0.028 3.972 20 O -0.294 6.294 21 H 0.043 0.957 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.192 0.808 30 H 0.183 0.817 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.271 6.357 15.713 17.751 hybrid contribution 0.006 -0.280 -0.375 0.468 sum -5.265 6.078 15.338 17.318 Atomic orbital electron populations 1.22053 0.99358 0.97947 0.99234 1.20867 0.92421 0.83956 0.97798 1.44606 1.74739 1.10727 1.01157 1.19419 1.40240 0.94412 0.84352 0.91149 1.25328 0.99666 0.99137 0.99665 1.70455 1.32175 1.27392 1.25155 0.85595 0.79439 0.77719 0.79771 1.21312 1.22779 1.20425 1.19914 0.90895 0.95110 0.87403 1.23489 0.99855 0.89413 0.91643 1.67704 1.20014 1.09747 1.21438 1.23132 0.89015 1.00813 0.92092 1.22852 0.98093 0.96660 1.05037 1.96683 1.37177 1.74292 1.85741 1.22032 0.97457 0.92484 0.99015 1.19108 0.94802 0.85487 0.97784 1.84934 1.73780 1.19161 1.51517 0.95749 0.95352 0.93841 0.92779 0.94524 0.94423 0.92063 0.89270 0.80779 0.81745 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 9.66 71.98 0.70 -5.40 16 2 C 0.17 8.31 5.73 86.38 0.50 8.80 16 3 N -0.59 -28.64 2.52 -706.33 -1.78 -30.42 16 4 C -0.25 -13.92 9.64 84.03 0.81 -13.11 16 5 H 0.07 3.93 8.00 -2.91 -0.02 3.91 16 6 C -0.04 -2.35 4.99 84.86 0.42 -1.93 16 7 N -0.91 -51.90 8.35 21.65 0.18 -51.72 16 8 Si 0.95 45.24 29.65 68.60 2.03 47.27 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C 0.19 7.56 5.77 85.63 0.49 8.06 16 13 C 0.10 3.60 6.36 42.67 0.27 3.87 16 14 N -0.48 -18.15 10.27 -183.43 -1.88 -20.03 16 15 C 0.11 3.42 10.94 84.72 0.93 4.34 16 16 C -0.14 -3.99 6.24 22.39 0.14 -3.85 16 17 Br -0.02 -0.51 33.73 -20.37 -0.69 -1.20 16 18 C -0.08 -2.25 9.89 22.57 0.22 -2.02 16 19 C 0.08 2.38 5.26 22.59 0.12 2.50 16 20 O -0.48 -12.79 11.51 -92.54 -1.06 -13.86 16 21 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.03 1.27 5.28 -2.38 -0.01 1.26 16 23 H 0.04 2.44 6.28 -2.39 -0.01 2.42 16 24 H 0.05 2.93 5.85 -2.39 -0.01 2.92 16 25 H 0.04 1.53 7.83 -2.38 -0.02 1.51 16 26 H 0.25 13.84 8.31 -92.72 -0.77 13.07 16 27 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 28 H 0.09 2.88 7.24 -2.39 -0.02 2.86 16 29 H 0.18 4.62 8.06 -2.91 -0.02 4.59 16 30 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.41 6.00 9.06 -74.06 -0.67 5.33 16 Total: -1.00 -64.67 282.01 1.89 -62.78 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.49 Total: 5.92 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.60 Total: 1.25 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.48 Total: -102.17 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.06 Total: -13.86 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.20 kcal Total: -64.67 1.89 -62.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891777458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.126 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds