Wall clock time and date at job start Tue Mar 31 2020 07:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48501 * 109.46521 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46886 * 299.99430 * 3 2 1 6 6 H 1.48491 * 109.47532 * 60.00040 * 3 2 1 7 7 C 1.37876 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99411 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00343 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47091 * 180.02562 * 9 7 2 11 11 O 1.42103 * 108.58019 * 70.38067 * 10 9 7 12 12 O 1.42103 * 108.57917 * 299.35076 * 10 9 7 13 13 C 1.81395 * 101.92179 * 184.86654 * 10 9 7 14 14 H 1.09003 * 110.27338 * 63.68983 * 13 10 9 15 15 C 1.54348 * 110.30517 * 301.61511 * 13 10 9 16 16 C 1.54344 * 102.39781 * 214.62477 * 15 13 10 17 17 C 1.51371 * 105.16656 * 26.35130 * 16 15 13 18 18 C 1.38475 * 130.37772 * 162.81027 * 17 16 15 19 19 C 1.38221 * 120.20909 * 179.97438 * 18 17 16 20 20 Cl 1.73603 * 120.05191 * 179.97438 * 19 18 17 21 21 C 1.38377 * 119.90343 * 359.97438 * 19 18 17 22 22 C 1.38081 * 119.91877 * 0.28400 * 21 19 18 23 23 C 1.38225 * 109.75937 * 342.80815 * 17 16 15 24 24 H 0.96999 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47070 * 59.99828 * 9 7 2 26 26 H 1.08997 * 109.46823 * 300.00120 * 9 7 2 27 27 H 1.09004 * 110.81721 * 96.39715 * 15 13 10 28 28 H 1.09004 * 110.82071 * 332.85586 * 15 13 10 29 29 H 1.08999 * 110.30435 * 267.42981 * 16 15 13 30 30 H 1.08998 * 110.38519 * 145.31206 * 16 15 13 31 31 H 1.08004 * 119.90126 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.03614 * 179.97438 * 21 19 18 33 33 H 1.07997 * 119.87939 * 179.69543 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 16 2.4299 -3.8779 0.0029 11 8 3.0679 -3.9270 1.2717 12 8 3.2259 -3.7940 -1.1712 13 6 1.3293 -5.3121 -0.1463 14 1 0.8002 -5.2846 -1.0989 15 6 0.3236 -5.3396 1.0242 16 6 0.1532 -6.8523 1.2792 17 6 1.4426 -7.4827 0.7982 18 6 1.9816 -8.7317 1.0570 19 6 3.1924 -9.0960 0.4986 20 17 3.8646 -10.6626 0.8262 21 6 3.8679 -8.2100 -0.3222 22 6 3.3337 -6.9624 -0.5764 23 6 2.1184 -6.5977 -0.0208 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 -0.6238 -4.8868 0.7317 28 1 0.7370 -4.8428 1.9020 29 1 -0.6921 -7.2389 0.7099 30 1 0.0120 -7.0445 2.3427 31 1 1.4543 -9.4235 1.6972 32 1 4.8142 -8.4923 -0.7593 33 1 3.8638 -6.2696 -1.2130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905268275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:18 Heat of formation + Delta-G solvation = -63.098191 kcal Electronic energy + Delta-G solvation = -19747.786273 eV Core-core repulsion = 16505.059251 eV Total energy + Delta-G solvation = -3242.727022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26244 -37.03324 -36.15220 -35.35762 -35.15237 -33.39405 -31.70174 -29.49111 -28.73937 -27.65611 -23.59936 -22.94677 -21.40192 -21.17522 -18.10449 -17.17180 -16.84954 -16.30635 -15.78270 -15.54430 -15.22340 -14.88297 -14.31257 -14.25644 -13.58838 -13.49805 -13.32044 -12.56884 -12.36009 -12.29548 -12.05612 -11.85683 -11.66004 -11.46818 -11.41946 -11.22270 -11.16069 -10.97961 -10.95438 -10.81296 -10.64111 -10.17142 -9.80220 -9.20580 -9.01189 -8.74938 -8.50542 -6.37158 -4.46611 0.69237 1.11125 1.14552 1.93773 3.18604 3.25911 3.33454 3.43267 3.65721 4.05533 4.14708 4.23770 4.61104 4.69262 4.76913 4.91938 4.99682 5.05915 5.14894 5.19410 5.36877 5.51066 5.52557 5.77032 5.77243 5.93458 6.02133 6.07592 6.08882 6.41489 6.58266 6.62111 6.64682 7.44334 7.70524 8.55396 9.20840 10.74667 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.003785 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.320627 B = 7396.229419 C = 7874.480073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.072 0.928 9 C -0.399 4.399 10 S 2.390 3.610 11 O -0.948 6.948 12 O -0.953 6.953 13 C -0.555 4.555 14 H 0.149 0.851 15 C -0.102 4.102 16 C -0.074 4.074 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.032 4.032 20 Cl -0.072 7.072 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.070 4.070 24 H 0.268 0.732 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -16.554 0.996 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.090 0.910 9 C -0.534 4.534 10 S 2.575 3.425 11 O -0.946 6.946 12 O -0.951 6.951 13 C -0.658 4.658 14 H 0.166 0.834 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.071 4.071 18 C -0.119 4.119 19 C -0.058 4.058 20 Cl -0.043 7.043 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.071 4.071 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.427 -16.653 1.076 16.693 hybrid contribution -0.423 0.543 -0.205 0.718 sum 0.004 -16.110 0.871 16.133 Atomic orbital electron populations 1.69949 1.06219 1.27663 1.47880 1.24925 0.95044 0.99576 0.93506 0.86300 0.80476 0.82034 0.78079 1.18931 1.20312 1.20299 1.20406 0.93003 0.88393 1.55102 0.90960 1.27490 1.09671 1.09407 1.06835 1.09230 0.79763 0.78229 0.75230 1.93482 1.73098 1.85886 1.42099 1.93465 1.66369 1.85567 1.49650 1.30029 1.12563 1.14984 1.08193 0.83361 1.22202 0.98899 0.97044 0.95854 1.21034 0.94026 0.94168 1.01959 1.20536 0.96872 0.92957 0.96709 1.20417 0.94491 0.96133 1.00902 1.20742 0.95835 0.87865 1.01405 1.98360 1.85147 1.26252 1.94589 1.20898 1.00456 0.92670 0.98379 1.20935 0.94694 0.96683 0.99666 1.19875 0.94644 0.94632 0.97945 0.92223 0.89644 0.89350 0.88216 0.89006 0.89405 0.89689 0.84841 0.84270 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 13.29 55.43 0.74 -23.42 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.40 9.12 -34.44 -0.31 -14.71 16 8 H 0.07 1.97 7.71 -52.48 -0.40 1.57 16 9 C -0.40 -9.16 5.18 36.01 0.19 -8.97 16 10 S 2.39 49.02 3.95 -107.50 -0.42 48.59 16 11 O -0.95 -21.92 17.68 -57.83 -1.02 -22.95 16 12 O -0.95 -21.78 17.40 -57.83 -1.01 -22.78 16 13 C -0.55 -8.48 3.33 -26.85 -0.09 -8.57 16 14 H 0.15 1.91 8.14 -51.93 -0.42 1.49 16 15 C -0.10 -1.34 5.92 -25.32 -0.15 -1.49 16 16 C -0.07 -0.83 6.77 -26.85 -0.18 -1.01 16 17 C -0.07 -0.93 6.14 -104.21 -0.64 -1.57 16 18 C -0.10 -1.22 9.82 -39.50 -0.39 -1.61 16 19 C -0.03 -0.39 6.32 -39.54 -0.25 -0.64 16 20 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16 21 C -0.11 -1.36 9.83 -39.59 -0.39 -1.75 16 22 C -0.10 -1.52 9.74 -39.54 -0.39 -1.90 16 23 C -0.07 -1.07 5.61 -104.20 -0.58 -1.66 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 26 H 0.09 1.95 7.88 -51.93 -0.41 1.54 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.27 7.56 -51.93 -0.39 0.88 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.14 2.16 7.37 -52.49 -0.39 1.77 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -32.50 311.02 -10.52 -43.02 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.69 Total: 1.37 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: -3.28 Total: -41.93 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.74 Total: -23.42 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -2.03 Total: -45.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 49.02 SS G_CDS: -0.42 Total: 48.59 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.50 -10.52 -43.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.078 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds