Wall clock time and date at job start Tue Mar 31 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48501 * 109.46521 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46886 * 299.99430 * 3 2 1 6 6 H 1.48491 * 109.47532 * 60.00040 * 3 2 1 7 7 C 1.37876 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99411 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00343 * 359.97438 * 7 2 1 10 10 S 1.81395 * 109.47091 * 180.02562 * 9 7 2 11 11 O 1.42103 * 108.58019 * 70.38067 * 10 9 7 12 12 O 1.42103 * 108.57917 * 299.35076 * 10 9 7 13 13 C 1.81395 * 101.92179 * 184.86654 * 10 9 7 14 14 H 1.09003 * 110.27338 * 63.68983 * 13 10 9 15 15 C 1.54348 * 110.30517 * 301.61511 * 13 10 9 16 16 C 1.54344 * 102.39781 * 214.62477 * 15 13 10 17 17 C 1.51371 * 105.16656 * 26.35130 * 16 15 13 18 18 C 1.38475 * 130.37772 * 162.81027 * 17 16 15 19 19 C 1.38221 * 120.20909 * 179.97438 * 18 17 16 20 20 Cl 1.73603 * 120.05191 * 179.97438 * 19 18 17 21 21 C 1.38377 * 119.90343 * 359.97438 * 19 18 17 22 22 C 1.38081 * 119.91877 * 0.28400 * 21 19 18 23 23 C 1.38225 * 109.75937 * 342.80815 * 17 16 15 24 24 H 0.96999 * 120.00143 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47070 * 59.99828 * 9 7 2 26 26 H 1.08997 * 109.46823 * 300.00120 * 9 7 2 27 27 H 1.09004 * 110.81721 * 96.39715 * 15 13 10 28 28 H 1.09004 * 110.82071 * 332.85586 * 15 13 10 29 29 H 1.08999 * 110.30435 * 267.42981 * 16 15 13 30 30 H 1.08998 * 110.38519 * 145.31206 * 16 15 13 31 31 H 1.08004 * 119.90126 * 359.97438 * 18 17 16 32 32 H 1.07996 * 120.03614 * 179.97438 * 21 19 18 33 33 H 1.07997 * 119.87939 * 179.69543 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 16 2.4299 -3.8779 0.0029 11 8 3.0679 -3.9270 1.2717 12 8 3.2259 -3.7940 -1.1712 13 6 1.3293 -5.3121 -0.1463 14 1 0.8002 -5.2846 -1.0989 15 6 0.3236 -5.3396 1.0242 16 6 0.1532 -6.8523 1.2792 17 6 1.4426 -7.4827 0.7982 18 6 1.9816 -8.7317 1.0570 19 6 3.1924 -9.0960 0.4986 20 17 3.8646 -10.6626 0.8262 21 6 3.8679 -8.2100 -0.3222 22 6 3.3337 -6.9624 -0.5764 23 6 2.1184 -6.5977 -0.0208 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 -0.6238 -4.8868 0.7317 28 1 0.7370 -4.8428 1.9020 29 1 -0.6921 -7.2389 0.7099 30 1 0.0120 -7.0445 2.3427 31 1 1.4543 -9.4235 1.6972 32 1 4.8142 -8.4923 -0.7593 33 1 3.8638 -6.2696 -1.2130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905268275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:17 Heat of formation + Delta-G solvation = -83.651710 kcal Electronic energy + Delta-G solvation = -19748.677541 eV Core-core repulsion = 16505.059251 eV Total energy + Delta-G solvation = -3243.618290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28549 -38.03295 -37.80167 -36.89791 -36.37996 -35.39395 -32.72550 -31.17799 -29.98969 -28.73860 -25.52840 -23.98388 -22.55202 -22.15151 -19.70321 -18.99748 -17.98832 -17.81199 -17.20562 -16.87775 -16.47562 -16.38935 -16.04147 -15.41261 -14.65739 -14.47848 -14.44905 -14.32814 -14.02984 -13.49293 -13.38911 -13.16107 -12.99282 -12.92116 -12.86839 -12.73379 -12.62841 -12.54306 -12.38081 -11.96387 -11.78320 -11.76416 -11.54420 -10.91206 -10.76829 -9.99933 -9.56442 -8.41082 -6.56887 -0.84970 0.00456 0.14430 1.00051 1.36862 1.38063 1.51810 2.07848 2.30562 2.41178 2.75224 2.91610 3.04593 3.22261 3.38447 3.79021 3.83991 4.02072 4.03405 4.17599 4.38222 4.49240 4.54504 4.73853 4.76472 4.83134 4.92794 5.00889 5.03885 5.07015 5.14728 5.36370 5.38288 5.62561 5.74879 6.51735 7.13499 8.71317 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.003785 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.320627 B = 7396.229419 C = 7874.480073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.565 4.565 8 H 0.055 0.945 9 C -0.415 4.415 10 S 2.397 3.603 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.521 4.521 14 H 0.176 0.824 15 C -0.112 4.112 16 C -0.068 4.068 17 C -0.069 4.069 18 C -0.098 4.098 19 C -0.033 4.033 20 Cl -0.055 7.055 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.105 4.105 24 H 0.274 0.726 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -18.459 1.554 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.603 4.603 8 H 0.074 0.926 9 C -0.548 4.548 10 S 2.588 3.412 11 O -0.981 6.981 12 O -0.986 6.986 13 C -0.631 4.631 14 H 0.193 0.807 15 C -0.150 4.150 16 C -0.106 4.106 17 C -0.070 4.070 18 C -0.117 4.117 19 C -0.060 4.060 20 Cl -0.026 7.026 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.106 4.106 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.794 -18.477 1.636 18.567 hybrid contribution -0.029 0.939 -0.371 1.010 sum -0.823 -17.538 1.265 17.603 Atomic orbital electron populations 1.69993 1.07115 1.28784 1.48197 1.25723 0.96003 1.02683 0.93028 0.85496 0.78985 0.78451 0.78976 1.19362 1.18981 1.18931 1.20763 0.92813 0.90979 1.55793 0.92636 1.27528 1.10363 1.09933 1.07000 1.08568 0.79693 0.79058 0.73884 1.93426 1.74441 1.86915 1.43353 1.93410 1.68021 1.86745 1.50396 1.29664 1.11449 1.10962 1.10997 0.80713 1.22442 0.99007 0.99305 0.94232 1.21137 0.93735 0.91779 1.03905 1.20846 0.97529 0.93021 0.95597 1.20752 0.94242 0.96122 1.00546 1.20910 0.95947 0.88422 1.00722 1.98369 1.84957 1.24892 1.94396 1.21095 1.01200 0.92048 0.98504 1.21019 0.95203 0.97585 1.00418 1.20028 0.95556 0.95009 1.00000 0.91637 0.89256 0.88962 0.85744 0.90231 0.86451 0.87388 0.81900 0.82542 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.96 13.29 21.45 0.28 -49.68 16 2 C 0.03 1.59 5.46 84.65 0.46 2.05 16 3 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.57 -31.79 9.12 25.60 0.23 -31.56 16 8 H 0.06 3.20 7.71 -2.91 -0.02 3.17 16 9 C -0.41 -19.63 5.18 71.24 0.37 -19.26 16 10 S 2.40 101.42 3.95 -56.49 -0.22 101.20 16 11 O -0.98 -47.27 17.68 -127.37 -2.25 -49.53 16 12 O -0.99 -47.27 17.40 -127.37 -2.22 -49.48 16 13 C -0.52 -15.36 3.33 30.52 0.10 -15.26 16 14 H 0.18 4.18 8.14 -2.39 -0.02 4.16 16 15 C -0.11 -2.66 5.92 31.51 0.19 -2.48 16 16 C -0.07 -1.24 6.77 30.52 0.21 -1.03 16 17 C -0.07 -1.62 6.14 -19.60 -0.12 -1.74 16 18 C -0.10 -2.05 9.82 22.32 0.22 -1.83 16 19 C -0.03 -0.74 6.32 22.30 0.14 -0.60 16 20 Cl -0.06 -1.04 28.96 -2.72 -0.08 -1.12 16 21 C -0.11 -2.71 9.83 22.27 0.22 -2.50 16 22 C -0.12 -3.69 9.74 22.30 0.22 -3.47 16 23 C -0.10 -3.08 5.61 -19.59 -0.11 -3.19 16 24 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.09 4.05 8.14 -2.39 -0.02 4.03 16 26 H 0.09 4.19 7.88 -2.39 -0.02 4.17 16 27 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.08 2.12 7.56 -2.39 -0.02 2.10 16 29 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.13 4.11 7.37 -2.91 -0.02 4.08 16 Total: -1.00 -72.03 311.02 0.79 -71.24 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.13 Total: 13.42 kcal Atomic # 6 Polarization: -82.98 SS G_CDS: 2.13 Total: -80.86 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.28 Total: -49.68 kcal Atomic # 8 Polarization: -94.54 SS G_CDS: -4.47 Total: -99.01 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 101.42 SS G_CDS: -0.22 Total: 101.20 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -72.03 0.79 -71.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.415 kcal (2) G-P(sol) polarization free energy of solvation -72.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds