Wall clock time and date at job start Tue Mar 31 2020 07:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 O 1.45204 * 109.46908 * 240.00916 * 2 1 3 5 5 C 1.34234 * 116.99877 * 89.99625 * 4 2 1 6 6 O 1.20819 * 120.00200 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99587 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.46991 * 180.02562 * 7 5 4 9 9 C 1.76193 * 100.00225 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00255 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00174 * 179.97438 * 9 8 7 12 12 N 1.31630 * 119.99690 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99975 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47233 * 90.00109 * 13 11 9 15 15 H 1.48500 * 109.47418 * 210.00528 * 13 11 9 16 16 H 1.48498 * 109.47447 * 330.00366 * 13 11 9 17 17 C 1.50693 * 109.47831 * 120.00595 * 2 1 3 18 18 C 1.38265 * 119.99277 * 84.97512 * 17 2 1 19 19 C 1.38215 * 120.02666 * 180.02562 * 18 17 2 20 20 C 1.38234 * 120.01496 * 0.02562 * 19 18 17 21 21 C 1.38327 * 119.98569 * 359.76615 * 20 19 18 22 22 Cl 1.73604 * 120.01716 * 180.27842 * 21 20 19 23 23 C 1.38195 * 119.99579 * 265.00507 * 17 2 1 24 24 H 1.09010 * 109.46877 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46638 * 299.98887 * 1 2 3 26 26 H 1.08993 * 109.47707 * 59.99675 * 1 2 3 27 27 H 1.08997 * 109.47404 * 300.00031 * 7 5 4 28 28 H 1.08998 * 109.47432 * 60.00335 * 7 5 4 29 29 H 0.97003 * 119.99246 * 179.97438 * 12 11 9 30 30 H 1.08007 * 119.98705 * 0.02725 * 18 17 2 31 31 H 1.08000 * 119.99310 * 180.02562 * 19 18 17 32 32 H 1.08006 * 120.00805 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.00237 * 359.97104 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6843 -1.1857 5 6 2.2170 0.0644 -2.2812 6 8 1.9971 1.2520 -2.2505 7 6 2.7180 -0.5767 -3.5497 8 16 2.8898 0.6848 -4.8362 9 6 3.4718 -0.3125 -6.1670 10 1 3.6149 -1.3734 -6.0243 11 6 3.7464 0.2653 -7.3988 12 7 3.5724 1.5585 -7.5725 13 14 4.3640 -0.7919 -8.8094 14 1 3.2074 -1.3050 -9.5868 15 1 5.2334 0.0233 -9.6953 16 1 5.1423 -1.9347 -8.2677 17 6 2.0325 -0.7105 1.2303 18 6 2.1640 -2.0868 1.2283 19 6 2.6243 -2.7392 2.3565 20 6 2.9530 -2.0160 3.4878 21 6 2.8256 -0.6386 3.4889 22 17 3.2449 0.2711 4.9068 23 6 2.3611 0.0137 2.3605 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 3.6869 -1.0404 -3.3643 28 1 2.0085 -1.3363 -3.8777 29 1 3.7647 1.9623 -8.4333 30 1 1.9071 -2.6524 0.3448 31 1 2.7273 -3.8143 2.3542 32 1 3.3130 -2.5259 4.3692 33 1 2.2582 1.0888 2.3619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919080997.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:02 Heat of formation + Delta-G solvation = -93.111692 kcal Electronic energy + Delta-G solvation = -18593.304198 eV Core-core repulsion = 15349.275693 eV Total energy + Delta-G solvation = -3244.028505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75040 -40.31033 -37.89361 -37.32187 -34.60764 -34.21821 -31.80231 -31.26402 -30.25132 -27.71109 -25.36023 -23.86177 -22.88881 -21.55765 -19.92650 -18.78699 -18.35507 -17.39049 -17.07602 -16.88861 -16.44815 -16.31673 -15.86678 -15.22915 -14.98367 -14.67328 -14.59493 -14.35109 -14.15268 -13.69146 -13.30387 -13.18280 -12.89703 -12.84399 -12.66584 -12.49151 -12.47308 -12.22874 -11.90477 -11.78437 -11.71039 -11.55004 -11.15554 -10.37453 -9.98793 -9.72470 -8.73260 -8.37243 -6.16784 0.07768 0.17740 0.97398 1.11365 1.13665 1.41773 1.43692 1.55644 1.87111 2.24196 2.57564 2.98016 3.23940 3.38805 3.74436 3.79085 3.99979 4.03428 4.10028 4.18376 4.24748 4.39209 4.44333 4.56790 4.68844 4.73902 4.85435 5.07682 5.16618 5.20905 5.33401 5.41598 5.50885 5.75661 6.18476 6.67450 7.04694 8.71976 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.002645 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.487943 B =10582.253609 C =10765.003551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 H 0.082 0.918 4 O -0.341 6.341 5 C 0.490 3.510 6 O -0.518 6.518 7 C -0.108 4.108 8 S -0.138 6.138 9 C -0.547 4.547 10 H 0.087 0.913 11 C 0.015 3.985 12 N -0.910 5.910 13 Si 1.000 3.000 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.085 4.085 18 C -0.096 4.096 19 C -0.102 4.102 20 C -0.106 4.106 21 C -0.045 4.045 22 Cl -0.070 7.070 23 C -0.108 4.108 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.272 0.728 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -10.270 22.966 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 H 0.100 0.900 4 O -0.259 6.259 5 C 0.332 3.668 6 O -0.406 6.406 7 C -0.256 4.256 8 S 0.089 5.911 9 C -0.695 4.695 10 H 0.105 0.895 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.821 3.179 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.182 1.182 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.071 4.071 22 Cl -0.041 7.041 23 C -0.126 4.126 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.173 0.827 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.582 -8.557 23.082 24.877 hybrid contribution 0.556 -1.006 -0.848 1.429 sum -3.025 -9.564 22.234 24.392 Atomic orbital electron populations 1.22165 0.91614 1.04187 1.03609 1.21556 0.95847 0.95919 0.79945 0.89978 1.86524 1.77255 1.42079 1.20018 1.22987 0.73576 0.85392 0.84842 1.90657 1.48254 1.17669 1.84027 1.23090 1.06267 1.03776 0.92502 1.85544 1.87174 1.13050 1.05346 1.23192 1.51667 0.96894 0.97732 0.89540 1.26121 0.94882 0.96717 1.01246 1.70167 1.46735 1.12089 1.25664 0.84935 0.78371 0.77895 0.76692 1.19241 1.20355 1.18152 1.19476 1.01263 0.94762 0.93091 1.21356 0.97307 0.93318 0.99426 1.21476 0.97360 1.01790 0.91389 1.21426 0.99328 0.91365 1.00363 1.20940 1.04089 0.93043 0.89066 1.98377 1.91991 1.74745 1.38969 1.20896 0.99253 1.00914 0.91565 0.90104 0.88676 0.92748 0.86123 0.85801 0.91870 0.84135 0.81899 0.82723 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.53 71.98 0.69 -2.64 16 2 C 0.12 3.04 2.77 29.84 0.08 3.12 16 3 H 0.08 2.29 7.07 -2.39 -0.02 2.27 16 4 O -0.34 -10.03 9.03 -51.46 -0.46 -10.49 16 5 C 0.49 18.10 7.95 71.24 0.57 18.67 16 6 O -0.52 -22.50 15.08 21.98 0.33 -22.17 16 7 C -0.11 -4.22 6.27 71.24 0.45 -3.78 16 8 S -0.14 -7.41 20.57 -56.49 -1.16 -8.57 16 9 C -0.55 -30.36 9.50 67.96 0.65 -29.72 16 10 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 11 C 0.02 0.86 5.49 84.86 0.47 1.32 16 12 N -0.91 -54.63 13.22 21.65 0.29 -54.35 16 13 Si 1.00 42.58 29.55 68.60 2.03 44.61 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 17 C -0.09 -1.78 5.01 -19.87 -0.10 -1.88 16 18 C -0.10 -1.71 9.35 22.27 0.21 -1.50 16 19 C -0.10 -1.39 10.04 22.26 0.22 -1.17 16 20 C -0.11 -1.52 9.83 22.29 0.22 -1.30 16 21 C -0.04 -0.79 6.32 22.32 0.14 -0.65 16 22 Cl -0.07 -1.18 28.96 -2.72 -0.08 -1.26 16 23 C -0.11 -2.10 9.47 22.29 0.21 -1.89 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.12 4.30 8.14 -2.40 -0.02 4.28 16 28 H 0.12 4.34 8.14 -2.40 -0.02 4.32 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.14 2.37 7.63 -2.91 -0.02 2.35 16 31 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -68.63 324.96 5.86 -62.78 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.12 Total: 10.87 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.80 Total: -21.42 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.29 Total: -54.35 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.13 Total: -32.66 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.16 Total: -8.57 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -68.63 5.86 -62.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919080997.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.335 kcal (2) G-P(sol) polarization free energy of solvation -68.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds