Wall clock time and date at job start Tue Mar 31 2020 07:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99822 * 2 1 4 4 H 1.48497 * 109.47188 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.46804 * 120.00059 * 3 2 1 6 6 H 1.48501 * 109.47083 * 239.99696 * 3 2 1 7 7 C 1.38814 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99552 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99734 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.63981 * 328.14058 * 10 9 7 12 12 C 1.55159 * 110.71801 * 205.00552 * 10 9 7 13 13 C 1.54917 * 101.57559 * 206.13456 * 12 10 9 14 14 N 1.47421 * 104.83502 * 37.01045 * 13 12 10 15 15 C 1.34778 * 125.64991 * 155.90738 * 14 13 12 16 16 O 1.21707 * 119.99696 * 354.82783 * 15 14 13 17 17 C 1.46569 * 119.99852 * 174.82938 * 15 14 13 18 18 C 1.36676 * 125.44837 * 185.37497 * 17 15 14 19 19 C 1.37525 * 113.28448 * 179.86665 * 18 17 15 20 20 Cl 1.73605 * 122.46003 * 180.18933 * 19 18 17 21 21 C 1.33876 * 115.08373 * 0.42486 * 19 18 17 22 22 S 1.70613 * 110.95601 * 359.76653 * 21 19 18 23 23 C 1.47027 * 108.70110 * 335.86845 * 14 13 12 24 24 H 0.97003 * 120.00177 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00380 * 0.02562 * 9 7 2 26 26 H 1.08999 * 111.00483 * 324.20655 * 12 10 9 27 27 H 1.09001 * 111.00648 * 88.06411 * 12 10 9 28 28 H 1.09006 * 110.36234 * 155.85094 * 13 12 10 29 29 H 1.09002 * 110.36388 * 278.05538 * 13 12 10 30 30 H 1.08001 * 123.35912 * 0.03457 * 18 17 15 31 31 H 1.07994 * 124.52277 * 179.76816 * 21 19 18 32 32 H 1.08996 * 109.88341 * 241.64292 * 23 14 13 33 33 H 1.08999 * 109.87764 * 120.48153 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1040 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0001 -3.5565 -0.5376 12 6 1.1931 -4.7900 -0.6107 13 6 1.7912 -6.0432 0.0761 14 7 2.1115 -5.6057 1.4470 15 6 2.2151 -6.4093 2.5240 16 8 1.9467 -7.5926 2.4284 17 6 2.6512 -5.8583 3.8102 18 6 2.8943 -6.5846 4.9422 19 6 3.2951 -5.8129 6.0077 20 17 3.6712 -6.4917 7.5606 21 6 3.3693 -4.4992 5.7608 22 16 2.9378 -4.1564 4.1461 23 6 2.3000 -4.1476 1.4445 24 1 -0.4850 -0.8401 -0.0004 25 1 0.3556 -2.3880 0.0016 26 1 0.1426 -4.6647 -0.3485 27 1 1.3212 -4.8385 -1.6920 28 1 1.0588 -6.8503 0.0968 29 1 2.6946 -6.3649 -0.4421 30 1 2.7852 -7.6578 4.9941 31 1 3.6630 -3.7556 6.4869 32 1 3.3167 -3.9047 1.7532 33 1 1.5836 -3.6801 2.1201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970177891.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:12 Heat of formation + Delta-G solvation = 9.834533 kcal Electronic energy + Delta-G solvation = -19453.912207 eV Core-core repulsion = 16246.640537 eV Total energy + Delta-G solvation = -3207.271671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00018 -38.36627 -37.30413 -36.05375 -34.49252 -31.88735 -30.57222 -29.18766 -27.51921 -25.47624 -23.84092 -22.73493 -20.84692 -20.50118 -19.17031 -18.09182 -17.59726 -16.41465 -16.20079 -15.98048 -15.08861 -14.67747 -14.39193 -13.86340 -13.67090 -13.40420 -13.35940 -13.11111 -12.97845 -12.58449 -12.28212 -11.64623 -11.53133 -11.46970 -11.30444 -10.89854 -10.82084 -10.64527 -10.47509 -10.12037 -10.05737 -9.34039 -9.15538 -9.13229 -8.65404 -8.47051 -7.29716 -6.27132 -3.31143 0.29986 1.18546 1.48999 2.00746 2.36249 3.01109 3.12341 3.43109 3.45268 3.63340 4.40453 4.54672 4.75826 4.93831 4.99228 5.05768 5.14188 5.39111 5.46283 5.50538 5.55009 5.71299 5.80096 5.86409 5.88508 5.93695 6.09277 6.26356 6.31846 6.58694 7.49298 7.63472 8.08529 8.57877 8.99858 9.86849 9.99356 11.20138 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.004327 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.535591 B = 6469.354347 C = 7936.708454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.036 4.036 3 Si 1.078 2.922 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.346 4.346 8 H 0.068 0.932 9 N -0.722 5.722 10 C 0.184 3.816 11 H 0.075 0.925 12 C -0.144 4.144 13 C 0.112 3.888 14 N -0.609 5.609 15 C 0.602 3.398 16 O -0.539 6.539 17 C -0.259 4.259 18 C -0.058 4.058 19 C -0.062 4.062 20 Cl -0.057 7.057 21 C -0.258 4.258 22 S 0.301 5.699 23 C 0.057 3.943 24 H 0.256 0.744 25 H 0.371 0.629 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.176 0.824 32 H 0.068 0.932 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -10.435 8.187 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.235 4.235 3 Si 0.908 3.092 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.476 4.476 8 H 0.086 0.914 9 N -0.363 5.363 10 C 0.071 3.929 11 H 0.092 0.908 12 C -0.183 4.183 13 C -0.010 4.010 14 N -0.342 5.342 15 C 0.391 3.609 16 O -0.418 6.418 17 C -0.380 4.380 18 C -0.092 4.092 19 C -0.102 4.102 20 Cl -0.029 7.029 21 C -0.397 4.397 22 S 0.569 5.431 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.205 0.795 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.086 0.914 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.688 -8.073 7.481 12.879 hybrid contribution 0.165 -2.935 1.372 3.244 sum 6.853 -11.008 8.853 15.701 Atomic orbital electron populations 1.70902 1.06125 1.28626 1.52379 1.25810 0.96939 1.01105 0.99617 0.83275 0.74331 0.75549 0.76027 1.20941 1.22052 1.22064 1.20054 0.92153 0.85487 1.49911 0.91355 1.42416 1.04945 1.00367 1.88546 1.21069 0.95705 0.85969 0.90171 0.90752 1.23151 1.00542 0.94066 1.00500 1.22222 1.00183 0.97838 0.80795 1.48376 1.68701 1.08852 1.08268 1.16473 0.77789 0.85200 0.81477 1.90811 1.51275 1.15294 1.84464 1.24542 1.15850 0.98629 0.98964 1.20386 0.97786 1.01737 0.89257 1.19487 1.09214 0.92353 0.89159 1.98355 1.93185 1.85256 1.26074 1.25791 1.08493 0.99425 1.05972 1.84339 1.57472 1.02590 0.98651 1.23553 1.01269 0.78161 1.04103 0.93225 0.79489 0.90595 0.89611 0.90378 0.91159 0.82269 0.80650 0.91392 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.04 13.70 55.49 0.76 -26.28 16 2 C -0.04 -0.96 5.50 -17.43 -0.10 -1.06 16 3 Si 1.08 24.02 29.92 -169.99 -5.09 18.94 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.35 -8.74 9.96 -15.06 -0.15 -8.89 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.27 16 9 N -0.72 -16.01 5.15 -51.65 -0.27 -16.28 16 10 C 0.18 3.19 3.61 -66.09 -0.24 2.95 16 11 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 12 C -0.14 -2.06 6.71 -24.58 -0.16 -2.23 16 13 C 0.11 1.54 6.93 -2.53 -0.02 1.52 16 14 N -0.61 -9.41 3.33 -172.09 -0.57 -9.98 16 15 C 0.60 9.89 7.80 -12.90 -0.10 9.79 16 16 O -0.54 -10.10 17.08 5.18 0.09 -10.01 16 17 C -0.26 -3.73 6.38 -36.79 -0.23 -3.96 16 18 C -0.06 -0.77 9.89 -40.41 -0.40 -1.17 16 19 C -0.06 -0.75 6.25 -41.37 -0.26 -1.01 16 20 Cl -0.06 -0.62 29.10 -51.86 -1.51 -2.13 16 21 C -0.26 -2.93 10.78 29.20 0.31 -2.62 16 22 S 0.30 3.81 18.47 -107.50 -1.99 1.83 16 23 C 0.06 0.91 4.93 -3.06 -0.02 0.89 16 24 H 0.26 7.26 6.77 -40.82 -0.28 6.98 16 25 H 0.37 8.59 6.59 -40.82 -0.27 8.32 16 26 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.07 1.03 6.82 -51.93 -0.35 0.68 16 33 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -29.72 308.21 -8.69 -38.41 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.41 Total: 6.64 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.36 Total: -5.78 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.08 Total: -52.54 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.94 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.99 Total: 1.83 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.51 Total: -2.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.72 -8.69 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177891.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.248 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds