Wall clock time and date at job start Tue Mar 31 2020 07:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47248 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47025 * 119.99611 * 3 2 1 6 6 H 1.48493 * 109.47347 * 239.99585 * 3 2 1 7 7 C 1.38819 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99860 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99929 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.64643 * 328.13986 * 10 9 7 12 12 C 1.55164 * 110.72099 * 204.99596 * 10 9 7 13 13 C 1.54906 * 101.58160 * 206.13421 * 12 10 9 14 14 N 1.47430 * 104.83326 * 37.01517 * 13 12 10 15 15 C 1.34778 * 125.65111 * 155.90895 * 14 13 12 16 16 O 1.21716 * 119.99699 * 354.82524 * 15 14 13 17 17 C 1.46466 * 119.99873 * 174.83000 * 15 14 13 18 18 C 1.36696 * 125.44256 * 185.37427 * 17 15 14 19 19 C 1.37410 * 113.31061 * 179.86002 * 18 17 15 20 20 C 1.34014 * 115.07085 * 0.43328 * 19 18 17 21 21 Cl 1.73600 * 124.52685 * 179.72578 * 20 19 18 22 22 S 1.70614 * 110.93989 * 359.75746 * 20 19 18 23 23 C 1.47023 * 108.70058 * 335.86553 * 14 13 12 24 24 H 0.97003 * 120.00177 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 26 26 H 1.08995 * 111.00226 * 324.21152 * 12 10 9 27 27 H 1.09001 * 111.00173 * 88.06462 * 12 10 9 28 28 H 1.08997 * 110.36623 * 155.84865 * 13 12 10 29 29 H 1.09006 * 110.36984 * 278.06468 * 13 12 10 30 30 H 1.07995 * 123.34339 * 0.03534 * 18 17 15 31 31 H 1.08000 * 122.46065 * 180.18939 * 19 18 17 32 32 H 1.08996 * 109.88683 * 241.64449 * 23 14 13 33 33 H 1.09001 * 109.88187 * 120.47645 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 1.2126 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0004 -3.5565 -0.5379 12 6 1.1933 -4.7899 -0.6127 13 6 1.7909 -6.0433 0.0739 14 7 2.1102 -5.6064 1.4453 15 6 2.2131 -6.4104 2.5220 16 8 1.9446 -7.5937 2.4258 17 6 2.6479 -5.8603 3.8079 18 6 2.8902 -6.5873 4.9399 19 6 3.2901 -5.8173 6.0054 20 6 3.3646 -4.5020 5.7593 21 17 3.8351 -3.3075 6.9278 22 16 2.9343 -4.1585 4.1445 23 6 2.2988 -4.1483 1.4435 24 1 -0.4850 -0.8401 -0.0004 25 1 0.3555 -2.3881 0.0005 26 1 0.1427 -4.6646 -0.3512 27 1 1.3222 -4.8380 -1.6940 28 1 1.0585 -6.8503 0.0938 29 1 2.6947 -6.3649 -0.4437 30 1 2.7810 -7.6605 4.9908 31 1 3.5233 -6.2405 6.9713 32 1 3.3153 -3.9055 1.7530 33 1 1.5819 -3.6810 2.1187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970638320.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:15 Heat of formation + Delta-G solvation = 11.241583 kcal Electronic energy + Delta-G solvation = -19514.989420 eV Core-core repulsion = 16307.778763 eV Total energy + Delta-G solvation = -3207.210656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98453 -38.23943 -37.27852 -36.52577 -34.47939 -31.86659 -30.49125 -29.00357 -27.50959 -25.30342 -23.82915 -22.77196 -20.88724 -20.50598 -19.22941 -18.07731 -17.58402 -16.45396 -16.17150 -15.89959 -15.04820 -14.66683 -14.37010 -13.86217 -13.69326 -13.53636 -13.38442 -13.08964 -12.78087 -12.62746 -12.28499 -11.67255 -11.53923 -11.44903 -11.44675 -10.86310 -10.80485 -10.54973 -10.46988 -10.10050 -10.03845 -9.32502 -9.11657 -8.92399 -8.80056 -8.44777 -7.28219 -6.25553 -3.29457 0.26407 0.96932 1.66427 2.02655 2.14109 2.97158 3.15638 3.44850 3.46939 3.64838 4.43468 4.56935 4.93960 4.97998 4.99853 5.15111 5.16865 5.40187 5.51892 5.56062 5.63914 5.76051 5.83557 5.87926 5.95364 6.03568 6.10176 6.27356 6.33197 6.59746 7.50524 7.65165 8.09544 8.59469 9.01357 9.88356 10.00734 11.21697 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.005417 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.210149 B = 5167.811413 C = 7208.394088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.036 4.036 3 Si 1.078 2.922 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.345 4.345 8 H 0.068 0.932 9 N -0.722 5.722 10 C 0.184 3.816 11 H 0.075 0.925 12 C -0.144 4.144 13 C 0.112 3.888 14 N -0.609 5.609 15 C 0.602 3.398 16 O -0.540 6.540 17 C -0.262 4.262 18 C -0.055 4.055 19 C -0.142 4.142 20 C -0.191 4.191 21 Cl -0.015 7.015 22 S 0.301 5.699 23 C 0.056 3.944 24 H 0.256 0.744 25 H 0.371 0.629 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.068 0.932 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -10.647 8.433 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.235 4.235 3 Si 0.908 3.092 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.475 4.475 8 H 0.086 0.914 9 N -0.362 5.362 10 C 0.071 3.929 11 H 0.093 0.907 12 C -0.183 4.183 13 C -0.010 4.010 14 N -0.342 5.342 15 C 0.390 3.610 16 O -0.420 6.420 17 C -0.383 4.383 18 C -0.089 4.089 19 C -0.174 4.174 20 C -0.337 4.337 21 Cl 0.014 6.986 22 S 0.569 5.431 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.205 0.795 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.086 0.914 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.746 -8.104 7.704 13.059 hybrid contribution 0.169 -2.793 1.337 3.101 sum 6.915 -10.897 9.041 15.758 Atomic orbital electron populations 1.70902 1.06117 1.28605 1.52400 1.25809 0.96946 1.01108 0.99620 0.83280 0.74348 0.75554 0.76045 1.20931 1.22025 1.22057 1.20051 0.92151 0.85474 1.49871 0.91357 1.42416 1.04951 1.00373 1.88506 1.21068 0.95718 0.85975 0.90117 0.90732 1.23149 1.00546 0.94061 1.00499 1.22218 1.00179 0.97829 0.80811 1.48395 1.68689 1.08846 1.08305 1.16498 0.77745 0.85202 0.81522 1.90808 1.51407 1.15272 1.84473 1.24756 1.16099 0.98006 0.99449 1.20525 0.97185 1.01513 0.89671 1.19986 1.04875 0.91030 1.01519 1.25703 1.12017 0.95385 1.00571 1.98375 1.90213 1.54078 1.55961 1.84462 1.58457 1.03017 0.97133 1.23560 1.01274 0.78191 1.04112 0.93244 0.79483 0.90593 0.89605 0.90380 0.91165 0.82436 0.83336 0.91400 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.30 13.70 55.49 0.76 -26.54 16 2 C -0.04 -0.98 5.50 -17.43 -0.10 -1.08 16 3 Si 1.08 24.38 29.92 -169.99 -5.09 19.29 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.34 -8.84 9.96 -15.06 -0.15 -8.99 16 8 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.72 -16.23 5.15 -51.65 -0.27 -16.50 16 10 C 0.18 3.25 3.61 -66.09 -0.24 3.01 16 11 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 12 C -0.14 -2.09 6.71 -24.58 -0.17 -2.25 16 13 C 0.11 1.55 6.93 -2.53 -0.02 1.53 16 14 N -0.61 -9.54 3.33 -172.13 -0.57 -10.11 16 15 C 0.60 9.92 7.80 -12.95 -0.10 9.81 16 16 O -0.54 -10.05 17.08 5.17 0.09 -9.96 16 17 C -0.26 -3.79 6.38 -36.83 -0.23 -4.03 16 18 C -0.06 -0.69 10.01 -40.44 -0.40 -1.10 16 19 C -0.14 -1.60 10.08 -41.37 -0.42 -2.02 16 20 C -0.19 -2.38 6.82 29.25 0.20 -2.18 16 21 Cl -0.01 -0.17 29.27 -51.86 -1.52 -1.69 16 22 S 0.30 4.13 18.46 -107.50 -1.98 2.15 16 23 C 0.06 0.93 4.93 -3.06 -0.02 0.91 16 24 H 0.26 7.33 6.78 -40.82 -0.28 7.05 16 25 H 0.37 8.69 6.59 -40.82 -0.27 8.43 16 26 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.07 7.99 -51.93 -0.41 0.65 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.07 1.07 6.82 -51.93 -0.35 0.72 16 33 H 0.08 1.41 6.90 -51.93 -0.36 1.05 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -29.95 308.34 -8.98 -38.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.41 Total: 6.15 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.64 Total: -6.37 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.08 Total: -53.15 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.09 Total: 19.29 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.98 Total: 2.15 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.95 -8.98 -38.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970638320.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.170 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds