Wall clock time and date at job start Tue Mar 31 2020 07:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99814 * 2 1 4 4 H 1.48491 * 109.47268 * 274.99263 * 3 2 1 5 5 H 1.48503 * 109.46989 * 34.99088 * 3 2 1 6 6 H 1.48497 * 109.46914 * 154.98998 * 3 2 1 7 7 C 1.38812 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99746 * 187.05123 * 7 2 1 9 9 N 1.36938 * 119.99767 * 7.04853 * 7 2 1 10 10 C 1.47019 * 125.65122 * 354.79553 * 9 7 2 11 11 C 1.54323 * 107.27318 * 178.98546 * 10 9 7 12 12 C 1.55164 * 102.93863 * 337.79949 * 11 10 9 13 13 H 1.09000 * 110.99860 * 153.58055 * 12 11 10 14 14 N 1.46495 * 111.00461 * 277.43101 * 12 11 10 15 15 C 1.34774 * 119.99700 * 205.00194 * 14 12 11 16 16 O 1.21636 * 120.00309 * 359.97438 * 15 14 12 17 17 C 1.47190 * 119.99971 * 180.02562 * 15 14 12 18 18 C 1.35970 * 123.45530 * 0.02562 * 17 15 14 19 19 S 1.70441 * 110.84574 * 180.02562 * 18 17 15 20 20 C 1.75509 * 92.45550 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 124.71658 * 180.02562 * 20 19 18 22 22 C 1.32894 * 110.56071 * 359.71260 * 20 19 18 23 23 C 1.47427 * 125.64559 * 174.83557 * 9 7 2 24 24 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.88371 * 59.55974 * 10 9 7 26 26 H 1.09009 * 109.87870 * 298.39735 * 10 9 7 27 27 H 1.08999 * 110.71613 * 219.44233 * 11 10 9 28 28 H 1.08991 * 110.72236 * 96.16353 * 11 10 9 29 29 H 0.96999 * 120.00133 * 24.99965 * 14 12 11 30 30 H 1.08004 * 124.57577 * 0.03246 * 18 17 15 31 31 H 1.07995 * 123.47856 * 180.24741 * 22 20 19 32 32 H 1.09006 * 110.36168 * 85.24897 * 23 9 7 33 33 H 1.09000 * 110.37117 * 322.93438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5042 2.6200 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1143 9 7 1.3333 -2.3835 -0.1466 10 6 -0.1282 -2.5323 -0.2032 11 6 -0.4287 -4.0332 -0.3995 12 6 0.8912 -4.5749 -1.0094 13 1 1.0202 -5.6335 -0.7836 14 7 0.9376 -4.3389 -2.4544 15 6 1.6945 -5.1282 -3.2421 16 8 2.3395 -6.0362 -2.7532 17 6 1.7417 -4.8907 -4.6940 18 6 1.0514 -3.8967 -5.3137 19 16 1.3384 -3.9151 -6.9937 20 6 2.4154 -5.2954 -6.8708 21 17 3.2256 -6.0399 -8.2135 22 6 2.5297 -5.6871 -5.6060 23 6 1.9495 -3.7169 -0.2723 24 1 -0.4850 0.8400 0.0004 25 1 -0.5268 -1.9616 -1.0419 26 1 -0.5726 -2.1842 0.7294 27 1 -1.2591 -4.1729 -1.0915 28 1 -0.6372 -4.5130 0.5567 29 1 0.4236 -3.6146 -2.8443 30 1 0.4082 -3.1906 -4.8095 31 1 3.1453 -6.5173 -5.2928 32 1 2.1562 -4.1337 0.7135 33 1 2.8658 -3.6576 -0.8596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015793083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:03 Heat of formation + Delta-G solvation = 17.479754 kcal Electronic energy + Delta-G solvation = -19503.908628 eV Core-core repulsion = 16296.968479 eV Total energy + Delta-G solvation = -3206.940149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.86391 -37.80304 -37.12306 -36.30161 -33.81737 -31.95284 -29.87721 -29.06518 -27.27861 -25.19364 -24.36059 -21.92988 -20.15868 -20.02559 -19.35955 -18.39874 -17.20303 -16.78843 -15.76907 -14.98675 -14.84530 -14.67594 -13.99169 -13.91934 -13.74970 -13.62153 -13.18420 -12.82117 -12.48207 -11.96976 -11.87681 -11.78960 -11.72329 -11.00828 -10.98304 -10.94690 -10.75878 -10.39962 -10.15834 -10.00364 -9.74503 -9.70922 -9.10189 -8.84704 -8.66286 -8.51325 -6.86280 -5.77464 -3.08898 0.47387 0.81113 1.53215 1.74154 1.93450 3.36706 3.39953 3.43280 3.44656 3.50472 4.46801 4.66718 4.98376 5.08038 5.27072 5.39755 5.42533 5.47473 5.61940 5.74141 5.79205 5.91826 6.15921 6.32522 6.44576 6.46608 6.66367 6.98537 7.48788 7.50799 7.75210 7.80042 8.20181 8.43483 9.17627 9.77643 10.43647 11.34789 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.003873 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.496816 B = 7226.926024 C = 8041.707309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.154 4.154 12 C 0.128 3.872 13 H 0.093 0.907 14 N -0.695 5.695 15 C 0.576 3.424 16 O -0.543 6.543 17 C -0.141 4.141 18 C -0.202 4.202 19 S 0.233 5.767 20 C -0.177 4.177 21 Cl -0.015 7.015 22 C -0.065 4.065 23 C 0.125 3.875 24 H 0.252 0.748 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.401 0.599 30 H 0.181 0.819 31 H 0.162 0.838 32 H 0.029 0.971 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -9.958 -14.536 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.193 4.193 12 C 0.023 3.977 13 H 0.111 0.889 14 N -0.345 5.345 15 C 0.361 3.639 16 O -0.422 6.422 17 C -0.159 4.159 18 C -0.341 4.341 19 S 0.497 5.503 20 C -0.320 4.320 21 Cl 0.014 6.986 22 C -0.097 4.097 23 C -0.003 4.003 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.236 0.764 30 H 0.198 0.802 31 H 0.180 0.820 32 H 0.047 0.953 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.529 -9.558 -15.465 18.188 hybrid contribution 0.754 0.485 1.007 1.348 sum 0.225 -9.073 -14.459 17.071 Atomic orbital electron populations 1.69962 1.04845 1.24995 1.57153 1.24779 0.95684 0.97547 1.02279 0.86139 0.78786 0.83665 0.77477 1.21682 1.21770 1.20642 1.19072 0.91146 0.82526 1.42655 0.90503 1.44490 1.01452 1.00971 1.86185 1.21189 0.84713 0.88119 1.01035 1.23231 0.95481 1.00371 1.00167 1.22182 0.97464 0.99520 0.78555 0.88941 1.45678 1.47433 1.33408 1.07964 1.17414 0.79614 0.82058 0.84806 1.90772 1.43767 1.32170 1.75518 1.20123 1.02213 0.98494 0.95024 1.25881 1.05091 1.03043 1.00089 1.83142 1.39863 1.25203 1.02050 1.25069 1.08693 1.04996 0.93213 1.98368 1.77217 1.80518 1.42537 1.21148 0.98807 1.00379 0.89328 1.21958 0.94927 0.86872 0.96499 0.93807 0.93508 0.93879 0.91573 0.90796 0.76361 0.80182 0.82011 0.95341 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 10.36 55.49 0.57 -25.47 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.17 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -14.86 3.39 -170.07 -0.58 -15.44 16 10 C 0.17 3.94 5.37 -3.07 -0.02 3.92 16 11 C -0.15 -2.63 6.55 -24.89 -0.16 -2.79 16 12 C 0.13 2.24 3.43 -65.78 -0.23 2.02 16 13 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 14 N -0.70 -11.26 5.16 -52.87 -0.27 -11.53 16 15 C 0.58 9.50 7.79 -12.63 -0.10 9.40 16 16 O -0.54 -10.51 16.44 5.25 0.09 -10.42 16 17 C -0.14 -1.91 5.98 -104.62 -0.63 -2.54 16 18 C -0.20 -2.27 10.38 29.92 0.31 -1.96 16 19 S 0.23 2.21 23.02 -107.50 -2.47 -0.26 16 20 C -0.18 -1.94 7.01 28.89 0.20 -1.73 16 21 Cl -0.01 -0.15 29.27 -51.86 -1.52 -1.66 16 22 C -0.07 -0.82 10.04 -38.98 -0.39 -1.21 16 23 C 0.12 2.61 6.93 -2.53 -0.02 2.59 16 24 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.05 1.14 7.30 -51.93 -0.38 0.76 16 26 H 0.04 1.10 7.61 -51.92 -0.40 0.70 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.40 6.04 7.16 -40.82 -0.29 5.75 16 30 H 0.18 1.77 7.01 -52.48 -0.37 1.40 16 31 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -30.71 311.13 -9.28 -39.99 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.49 Total: 2.32 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.27 Total: 1.09 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.28 Total: -52.44 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.47 Total: -0.26 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.71 -9.28 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015793083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.466 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds