Wall clock time and date at job start Tue Mar 31 2020 07:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00427 * 2 1 4 4 H 1.48492 * 109.47611 * 240.00379 * 3 2 1 5 5 H 1.48504 * 109.46728 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47270 * 120.00053 * 3 2 1 7 7 C 1.38819 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64528 * 359.97309 * 9 7 2 11 11 C 1.54329 * 107.27051 * 178.95775 * 10 9 7 12 12 C 1.55149 * 102.94266 * 337.81247 * 11 10 9 13 13 H 1.08999 * 111.00384 * 277.38517 * 12 11 10 14 14 N 1.46505 * 111.00357 * 153.57283 * 12 11 10 15 15 C 1.34772 * 119.99814 * 154.99980 * 14 12 11 16 16 O 1.21643 * 120.00201 * 0.02562 * 15 14 12 17 17 C 1.47182 * 120.00084 * 179.97438 * 15 14 12 18 18 C 1.35971 * 123.45326 * 359.97438 * 17 15 14 19 19 S 1.70448 * 110.84486 * 179.97438 * 18 17 15 20 20 C 1.75497 * 92.45438 * 0.02562 * 19 18 17 21 21 Cl 1.73608 * 124.71720 * 179.97438 * 20 19 18 22 22 C 1.32893 * 110.56625 * 0.02562 * 20 19 18 23 23 C 1.47421 * 125.65194 * 179.97438 * 9 7 2 24 24 H 0.97003 * 119.99873 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.88138 * 59.55036 * 10 9 7 26 26 H 1.08994 * 109.88752 * 298.38343 * 10 9 7 27 27 H 1.08992 * 110.72076 * 219.44682 * 11 10 9 28 28 H 1.09004 * 110.86736 * 96.24595 * 11 10 9 29 29 H 0.96992 * 119.99750 * 334.99693 * 14 12 11 30 30 H 1.07997 * 124.58028 * 0.03316 * 18 17 15 31 31 H 1.07992 * 123.47579 * 180.02562 * 22 20 19 32 32 H 1.09005 * 110.36330 * 85.27078 * 23 9 7 33 33 H 1.09003 * 110.36754 * 322.94854 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5327 0.0006 11 6 -0.4485 -4.0441 -0.0267 12 6 0.8513 -4.6559 -0.6125 13 1 0.8552 -4.5962 -1.7009 14 7 1.0288 -6.0394 -0.1646 15 6 1.7585 -6.8985 -0.9035 16 8 2.2701 -6.5251 -1.9420 17 6 1.9373 -8.2883 -0.4533 18 6 1.3991 -8.7795 0.6948 19 16 1.8070 -10.4214 0.9019 20 6 2.7280 -10.4591 -0.5915 21 17 3.5571 -11.8547 -1.2070 22 6 2.7034 -9.2704 -1.1852 23 6 1.9334 -3.7312 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 -0.5582 -2.0518 -0.8826 26 1 -0.5537 -2.0848 0.9028 27 1 -1.2990 -4.2512 -0.6762 28 1 -0.6327 -4.4208 0.9795 29 1 0.6212 -6.3371 0.6636 30 1 0.7941 -8.2069 1.3821 31 1 3.2032 -9.0606 -2.1193 32 1 2.1673 -4.0425 1.0165 33 1 2.8323 -3.7403 -0.6180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015793084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:07 Heat of formation + Delta-G solvation = 18.977503 kcal Electronic energy + Delta-G solvation = -19081.377586 eV Core-core repulsion = 15874.502384 eV Total energy + Delta-G solvation = -3206.875202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.96469 -37.84557 -37.18888 -36.43015 -34.11925 -31.99605 -30.02918 -29.06882 -27.16580 -25.30504 -24.29600 -21.88295 -20.45594 -20.13668 -19.44051 -18.53217 -17.31119 -16.85118 -15.82224 -15.09108 -14.95360 -14.62821 -14.25662 -13.97618 -13.82250 -13.74890 -12.97693 -12.86124 -12.44722 -12.27318 -11.94213 -11.89116 -11.79417 -11.13740 -11.03538 -10.92372 -10.75689 -10.39868 -10.13866 -9.93424 -9.83428 -9.69467 -9.24671 -8.93512 -8.71546 -8.59811 -6.85376 -5.72072 -3.05705 0.30631 0.66452 1.36955 1.60386 1.80714 3.25505 3.32209 3.42190 3.46089 3.47596 4.45747 4.50893 4.81570 4.91877 5.23278 5.31088 5.42308 5.45263 5.59404 5.70408 5.76771 5.79520 6.14776 6.28026 6.38720 6.54036 6.67382 6.93041 7.51501 7.55814 7.62117 7.80178 8.23126 8.30393 9.21061 9.80871 10.45551 11.39846 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.038615 B = 0.002738 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.938316 B =10223.924835 C =10546.796102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.099 0.901 14 N -0.708 5.708 15 C 0.574 3.426 16 O -0.531 6.531 17 C -0.138 4.138 18 C -0.209 4.209 19 S 0.232 5.768 20 C -0.175 4.175 21 Cl -0.012 7.012 22 C -0.066 4.066 23 C 0.129 3.871 24 H 0.253 0.747 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.395 0.605 30 H 0.179 0.821 31 H 0.164 0.836 32 H 0.020 0.980 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -23.931 2.857 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.117 0.883 14 N -0.358 5.358 15 C 0.358 3.642 16 O -0.408 6.408 17 C -0.156 4.156 18 C -0.347 4.347 19 S 0.496 5.504 20 C -0.317 4.317 21 Cl 0.016 6.984 22 C -0.097 4.097 23 C 0.002 3.998 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.230 0.770 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.037 0.963 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.727 -24.605 3.146 24.816 hybrid contribution 0.595 1.733 -0.653 1.945 sum 1.321 -22.872 2.493 23.046 Atomic orbital electron populations 1.69931 1.04886 1.25220 1.57131 1.24804 0.95756 0.97690 1.02171 0.86167 0.78440 0.83022 0.77952 1.21089 1.21580 1.21171 1.19032 0.90492 0.82256 1.43833 0.90404 1.44380 1.01616 0.99772 1.87281 1.21152 0.84539 0.87352 1.01534 1.23191 0.95847 1.00086 0.99700 1.22372 0.97023 0.78146 1.00245 0.88265 1.45851 1.52597 1.11671 1.25720 1.17466 0.78953 0.83806 0.83985 1.90828 1.48077 1.78182 1.23751 1.20157 1.03467 0.95810 0.96137 1.25814 1.05844 1.01242 1.01841 1.83137 1.44872 1.04462 1.17884 1.25080 1.09658 0.94021 1.02980 1.98378 1.76111 1.37780 1.86090 1.21191 0.98107 0.89348 1.01079 1.21818 0.94839 0.86163 0.96999 0.93662 0.93166 0.93535 0.91527 0.92077 0.77023 0.80348 0.81867 0.96279 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.31 55.49 0.57 -26.47 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -15.55 3.39 -170.08 -0.58 -16.13 16 10 C 0.18 4.25 5.37 -3.06 -0.02 4.24 16 11 C -0.15 -2.61 6.60 -24.90 -0.16 -2.78 16 12 C 0.13 2.27 3.42 -65.79 -0.23 2.04 16 13 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 14 N -0.71 -9.89 5.17 -52.89 -0.27 -10.17 16 15 C 0.57 8.61 7.79 -12.63 -0.10 8.51 16 16 O -0.53 -10.15 16.44 5.24 0.09 -10.06 16 17 C -0.14 -1.59 5.98 -104.63 -0.63 -2.22 16 18 C -0.21 -1.74 10.38 29.92 0.31 -1.43 16 19 S 0.23 1.69 23.02 -107.50 -2.47 -0.79 16 20 C -0.17 -1.64 7.01 28.89 0.20 -1.44 16 21 Cl -0.01 -0.10 29.27 -51.86 -1.52 -1.62 16 22 C -0.07 -0.74 10.04 -38.98 -0.39 -1.13 16 23 C 0.13 2.77 6.93 -2.54 -0.02 2.75 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 25 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 26 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 29 H 0.40 4.18 7.06 -40.82 -0.29 3.89 16 30 H 0.18 1.02 7.01 -52.49 -0.37 0.66 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -32.39 310.87 -9.27 -41.66 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.47 Total: 0.02 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.28 Total: 1.63 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.28 Total: -52.77 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.79 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.39 -9.27 -41.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015793084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.641 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds