Wall clock time and date at job start Tue Mar 31 2020 07:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48509 * 109.47366 * 274.99009 * 3 2 1 5 5 H 1.48501 * 109.46967 * 34.98806 * 3 2 1 6 6 H 1.48502 * 109.47526 * 154.99201 * 3 2 1 7 7 C 1.38816 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00446 * 187.05321 * 7 2 1 9 9 N 1.36941 * 119.99709 * 7.04287 * 7 2 1 10 10 C 1.47020 * 125.64997 * 354.79653 * 9 7 2 11 11 C 1.54326 * 107.27178 * 178.98237 * 10 9 7 12 12 C 1.55159 * 102.93976 * 337.80571 * 11 10 9 13 13 H 1.09002 * 111.00414 * 153.61626 * 12 11 10 14 14 N 1.46501 * 111.00324 * 277.42649 * 12 11 10 15 15 C 1.34776 * 120.00284 * 205.00074 * 14 12 11 16 16 O 1.21720 * 119.99488 * 0.02562 * 15 14 12 17 17 C 1.46459 * 120.00253 * 180.02562 * 15 14 12 18 18 C 1.36700 * 125.45064 * 180.30583 * 17 15 14 19 19 C 1.37404 * 113.31547 * 180.17494 * 18 17 15 20 20 C 1.34005 * 115.07416 * 359.51173 * 19 18 17 21 21 Cl 1.73604 * 124.53337 * 180.29113 * 20 19 18 22 22 S 1.70620 * 110.93913 * 0.26850 * 20 19 18 23 23 C 1.47421 * 125.64684 * 174.84075 * 9 7 2 24 24 H 0.96996 * 119.99858 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.88362 * 59.56187 * 10 9 7 26 26 H 1.08999 * 110.00870 * 298.47128 * 10 9 7 27 27 H 1.09000 * 110.72068 * 219.44362 * 11 10 9 28 28 H 1.08997 * 110.72059 * 96.16466 * 11 10 9 29 29 H 0.97005 * 120.00046 * 25.00163 * 14 12 11 30 30 H 1.08007 * 123.33844 * 359.96013 * 18 17 15 31 31 H 1.08002 * 122.45909 * 179.77594 * 19 18 17 32 32 H 1.09002 * 110.36904 * 85.25001 * 23 9 7 33 33 H 1.09003 * 110.37163 * 322.92508 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0842 -1.2058 0.1143 9 7 1.3333 -2.3835 -0.1465 10 6 -0.1283 -2.5323 -0.2029 11 6 -0.4288 -4.0332 -0.3992 12 6 0.8910 -4.5750 -1.0090 13 1 1.0198 -5.6337 -0.7838 14 7 0.9374 -4.3391 -2.4542 15 6 1.6943 -5.1284 -3.2419 16 8 2.3390 -6.0376 -2.7527 17 6 1.7412 -4.8922 -4.6866 18 6 2.4635 -5.6248 -5.5868 19 6 2.3286 -5.1826 -6.8807 20 6 1.5152 -4.1295 -7.0391 21 17 1.1634 -3.3783 -8.5642 22 16 0.8708 -3.6260 -5.5416 23 6 1.9494 -3.7170 -0.2721 24 1 -0.4850 0.8400 0.0004 25 1 -0.5269 -1.9616 -1.0417 26 1 -0.5749 -2.1835 0.7281 27 1 -1.2593 -4.1730 -1.0912 28 1 -0.6373 -4.5131 0.5570 29 1 0.4234 -3.6147 -2.8441 30 1 3.0816 -6.4654 -5.3080 31 1 2.8374 -5.6520 -7.7097 32 1 2.1561 -4.1338 0.7137 33 1 2.8656 -3.6578 -0.8596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016175515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:15 Heat of formation + Delta-G solvation = 0.554179 kcal Electronic energy + Delta-G solvation = -19507.107358 eV Core-core repulsion = 16299.433261 eV Total energy + Delta-G solvation = -3207.674097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.07740 -39.28199 -38.55557 -37.54453 -35.46469 -33.73196 -31.31089 -30.55175 -28.91214 -26.63353 -25.84740 -23.16453 -21.96640 -21.43484 -20.55936 -19.87315 -18.82839 -17.56470 -17.25533 -16.70615 -16.45747 -16.21397 -15.64953 -15.35906 -14.92714 -14.80078 -14.36823 -14.03507 -13.88015 -13.64687 -13.60087 -12.88866 -12.82605 -12.60349 -12.47121 -12.31127 -12.08418 -12.01511 -11.87738 -11.83717 -11.61448 -11.21638 -10.69784 -10.24306 -9.79133 -9.76533 -8.85982 -7.85943 -5.18846 -0.76531 -0.10119 0.60435 1.03109 1.18570 1.46490 1.47139 1.55984 2.00271 2.12208 2.49505 3.33313 3.63017 3.67160 3.85133 4.04127 4.06039 4.26727 4.31115 4.66742 4.71108 4.73764 4.85931 4.90842 4.98139 5.03572 5.13160 5.45225 5.48259 5.66486 5.76930 6.20337 6.39158 7.02026 7.12197 7.77431 8.41807 9.24585 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.004506 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.511371 B = 6211.901565 C = 7372.760935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.181 3.819 11 C -0.135 4.135 12 C 0.139 3.861 13 H 0.111 0.889 14 N -0.699 5.699 15 C 0.590 3.410 16 O -0.564 6.564 17 C -0.281 4.281 18 C -0.043 4.043 19 C -0.129 4.129 20 C -0.172 4.172 21 Cl 0.000 7.000 22 S 0.263 5.737 23 C 0.122 3.878 24 H 0.248 0.752 25 H 0.021 0.979 26 H 0.009 0.991 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.403 0.597 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.037 0.963 33 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -10.714 -15.365 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.056 3.944 11 C -0.173 4.173 12 C 0.034 3.966 13 H 0.129 0.871 14 N -0.348 5.348 15 C 0.378 3.622 16 O -0.445 6.445 17 C -0.402 4.402 18 C -0.076 4.076 19 C -0.162 4.162 20 C -0.318 4.318 21 Cl 0.029 6.971 22 S 0.530 5.470 23 C -0.005 4.005 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.238 0.762 30 H 0.188 0.812 31 H 0.199 0.801 32 H 0.054 0.946 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.994 -9.888 -14.678 17.726 hybrid contribution 1.135 0.571 -0.543 1.382 sum 0.141 -9.316 -15.221 17.846 Atomic orbital electron populations 1.70144 1.05949 1.25287 1.57842 1.25494 0.96522 1.00394 1.02435 0.85194 0.77829 0.79802 0.77331 1.21344 1.21980 1.19839 1.19346 0.91353 0.83979 1.42539 0.90868 1.44714 1.02473 1.01599 1.86030 1.20988 0.83521 0.91593 0.98284 1.23108 0.96085 0.96095 1.02020 1.22076 0.96283 0.99662 0.78573 0.87107 1.45760 1.47601 1.33483 1.07967 1.17106 0.78828 0.81478 0.84828 1.90788 1.44994 1.33224 1.75522 1.24677 1.11833 1.06418 0.97264 1.20851 0.96949 0.99377 0.90457 1.20269 1.00573 0.96605 0.98718 1.25186 1.08378 1.03556 0.94711 1.98391 1.93666 1.80244 1.24800 1.83545 1.42254 1.28141 0.93058 1.22080 0.95268 0.86008 0.97117 0.94259 0.96028 0.97227 0.88843 0.88630 0.76242 0.81201 0.80093 0.94579 0.95244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.71 10.36 21.65 0.22 -54.49 16 2 C -0.05 -3.05 5.48 84.86 0.46 -2.59 16 3 Si 0.97 45.25 29.56 68.60 2.03 47.27 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.53 10.27 84.03 0.86 -12.67 16 8 H 0.07 4.01 7.84 -2.91 -0.02 3.99 16 9 N -0.62 -31.09 3.39 -691.98 -2.35 -33.44 16 10 C 0.18 8.34 5.37 86.73 0.47 8.81 16 11 C -0.13 -4.43 6.55 31.78 0.21 -4.22 16 12 C 0.14 4.73 3.43 46.38 0.16 4.89 16 13 H 0.11 3.48 7.54 -2.39 -0.02 3.46 16 14 N -0.70 -22.70 5.18 -440.11 -2.28 -24.98 16 15 C 0.59 19.05 7.78 86.38 0.67 19.72 16 16 O -0.56 -20.99 16.48 -4.41 -0.07 -21.06 16 17 C -0.28 -7.38 6.45 24.05 0.16 -7.22 16 18 C -0.04 -0.92 10.01 21.71 0.22 -0.70 16 19 C -0.13 -2.29 10.08 21.11 0.21 -2.08 16 20 C -0.17 -3.40 6.82 66.86 0.46 -2.94 16 21 Cl 0.00 0.01 29.27 -2.72 -0.08 -0.07 16 22 S 0.26 5.99 22.15 -56.49 -1.25 4.73 16 23 C 0.12 5.08 6.93 86.85 0.60 5.68 16 24 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.02 1.09 7.30 -2.39 -0.02 1.07 16 26 H 0.01 0.50 7.61 -2.39 -0.02 0.48 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.40 12.72 7.78 -92.70 -0.72 12.00 16 30 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.76 311.92 1.12 -64.64 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.43 Total: 10.72 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.48 Total: 6.67 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -4.41 Total: -112.91 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.07 Total: -21.06 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.25 Total: 4.73 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -65.76 1.12 -64.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016175515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.196 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds