Wall clock time and date at job start Tue Mar 31 2020 07:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00381 * 2 1 4 4 H 1.48498 * 109.47047 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47046 * 30.00066 * 3 2 1 6 6 H 1.48496 * 109.47336 * 149.99937 * 3 2 1 7 7 C 1.38815 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00086 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00291 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00457 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.91671 * 37.44257 * 10 9 7 12 12 C 1.55147 * 111.00901 * 161.34541 * 10 9 7 13 13 C 1.54337 * 103.02224 * 153.38075 * 12 10 9 14 14 N 1.47021 * 107.26511 * 338.14000 * 13 12 10 15 15 C 1.34771 * 125.64864 * 178.84447 * 14 13 12 16 16 O 1.21641 * 120.00029 * 184.95776 * 15 14 13 17 17 C 1.47182 * 120.00098 * 4.96170 * 15 14 13 18 18 C 1.35975 * 123.45796 * 173.96012 * 17 15 14 19 19 S 1.70440 * 110.84276 * 179.78589 * 18 17 15 20 20 C 1.75497 * 92.45992 * 0.30877 * 19 18 17 21 21 Cl 1.73605 * 124.72107 * 179.97438 * 20 19 18 22 22 C 1.32889 * 110.55942 * 359.69270 * 20 19 18 23 23 C 1.47424 * 108.70369 * 358.58700 * 14 13 12 24 24 H 0.97005 * 120.00078 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99634 * 359.97438 * 9 7 2 26 26 H 1.09003 * 110.72616 * 271.94071 * 12 10 9 27 27 H 1.08998 * 110.72123 * 35.21478 * 12 10 9 28 28 H 1.08998 * 109.98930 * 218.66621 * 13 12 10 29 29 H 1.08998 * 109.77694 * 97.50229 * 13 12 10 30 30 H 1.07991 * 124.57590 * 0.02816 * 18 17 15 31 31 H 1.08004 * 123.47458 * 180.19338 * 22 20 19 32 32 H 1.08997 * 110.36581 * 143.19075 * 23 14 13 33 33 H 1.08996 * 110.36858 * 265.40811 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.6067 -3.2121 -0.6194 12 6 5.5787 -2.2664 -0.4627 13 6 6.3258 -3.4281 0.2260 14 7 5.5075 -3.8559 1.3701 15 6 5.8042 -4.8629 2.2152 16 8 5.0088 -5.1891 3.0758 17 6 7.0907 -5.5681 2.0968 18 6 7.5131 -6.5105 2.9813 19 16 9.0407 -7.1202 2.5343 20 6 9.1278 -6.0788 1.1244 21 17 10.4543 -6.0389 0.0051 22 6 8.0345 -5.3294 1.0295 23 6 4.3116 -2.9969 1.4434 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3622 0.0004 26 1 5.6556 -2.3445 -1.5472 27 1 5.9622 -1.3068 -0.1160 28 1 7.3015 -3.0892 0.5743 29 1 6.4464 -4.2552 -0.4735 30 1 6.9543 -6.8323 3.8475 31 1 7.8689 -4.6153 0.2364 32 1 3.4454 -3.5786 1.7584 33 1 4.4814 -2.1681 2.1307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019470962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:33 Heat of formation + Delta-G solvation = 26.778162 kcal Electronic energy + Delta-G solvation = -19324.331478 eV Core-core repulsion = 16117.794538 eV Total energy + Delta-G solvation = -3206.536940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.24938 -37.86704 -37.37902 -36.51381 -34.32988 -31.71507 -30.16972 -29.73306 -28.45899 -25.27333 -23.66802 -22.79854 -20.82546 -20.28167 -19.46451 -18.41392 -17.67547 -16.34194 -16.19759 -15.84582 -14.89749 -14.67531 -14.22112 -14.03206 -13.75240 -13.73384 -13.26601 -13.21609 -12.67448 -12.60305 -12.46495 -11.87311 -11.84660 -11.68175 -11.29514 -11.13660 -10.87679 -10.76096 -10.51575 -10.11820 -9.94752 -9.66521 -9.24798 -9.07733 -8.86967 -8.45543 -7.41646 -5.84846 -3.23531 0.35749 0.67042 1.36321 1.57300 1.80329 3.12077 3.26783 3.31999 3.34015 3.40974 4.50168 4.51310 4.57197 4.68136 4.90846 4.99313 5.16881 5.19837 5.32621 5.47786 5.54708 5.62162 5.69061 5.75677 5.82783 6.06106 6.19524 6.38629 6.49227 6.71718 7.61157 7.89277 8.20873 8.33484 9.09762 9.81403 9.98808 11.32796 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.028439 B = 0.003291 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.340719 B = 8505.523810 C = 9222.612319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.254 4.254 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.074 0.926 12 C -0.146 4.146 13 C 0.096 3.904 14 N -0.606 5.606 15 C 0.589 3.411 16 O -0.538 6.538 17 C -0.145 4.145 18 C -0.177 4.177 19 S 0.228 5.772 20 C -0.171 4.171 21 Cl -0.013 7.013 22 C -0.114 4.114 23 C 0.083 3.917 24 H 0.261 0.739 25 H 0.364 0.636 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.184 0.816 31 H 0.179 0.821 32 H 0.079 0.921 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.429 -13.076 1.266 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.092 0.908 12 C -0.184 4.184 13 C -0.028 4.028 14 N -0.339 5.339 15 C 0.376 3.624 16 O -0.417 6.417 17 C -0.162 4.162 18 C -0.316 4.316 19 S 0.492 5.508 20 C -0.314 4.314 21 Cl 0.016 6.984 22 C -0.144 4.144 23 C -0.042 4.042 24 H 0.071 0.929 25 H 0.198 0.802 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.201 0.799 31 H 0.195 0.805 32 H 0.097 0.903 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.823 -14.412 2.256 27.934 hybrid contribution -0.284 2.342 -0.612 2.437 sum 23.539 -12.070 1.644 26.504 Atomic orbital electron populations 1.69698 1.05156 1.26037 1.56597 1.24689 0.95234 0.97292 1.01453 0.86558 0.79233 0.84926 0.77826 1.20921 1.21606 1.20279 1.19079 0.80247 0.94961 1.44104 0.88936 1.42643 1.04211 1.01426 1.89430 1.21277 0.89955 0.89841 0.92352 0.90770 1.22999 0.96942 0.97644 1.00848 1.22437 0.94798 0.97497 0.88043 1.48314 1.24662 1.32321 1.28587 1.17109 0.85151 0.79062 0.81107 1.90815 1.49696 1.65629 1.35548 1.20081 0.97150 1.01750 0.97180 1.25699 1.00941 1.00476 1.04473 1.83149 1.13039 1.37491 1.17115 1.25163 0.96862 1.08001 1.01396 1.98380 1.43608 1.97732 1.58706 1.22283 0.91370 1.00550 1.00196 1.23394 0.86219 0.93009 1.01567 0.92866 0.80205 0.89649 0.90493 0.91069 0.90872 0.79880 0.80461 0.90285 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.33 27.74 -169.99 -4.71 16.62 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 7 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.74 -16.36 5.08 -51.35 -0.26 -16.62 16 10 C 0.18 3.16 3.69 -65.79 -0.24 2.92 16 11 H 0.07 1.37 8.13 -51.92 -0.42 0.95 16 12 C -0.15 -1.90 6.57 -24.89 -0.16 -2.06 16 13 C 0.10 1.09 4.91 -3.06 -0.02 1.08 16 14 N -0.61 -9.17 3.33 -171.87 -0.57 -9.74 16 15 C 0.59 9.35 7.81 -12.63 -0.10 9.26 16 16 O -0.54 -10.48 16.97 5.24 0.09 -10.39 16 17 C -0.14 -1.77 5.96 -104.63 -0.62 -2.39 16 18 C -0.18 -1.82 10.52 29.92 0.31 -1.51 16 19 S 0.23 1.79 23.02 -107.50 -2.47 -0.69 16 20 C -0.17 -1.55 7.01 28.89 0.20 -1.35 16 21 Cl -0.01 -0.10 29.27 -51.86 -1.52 -1.62 16 22 C -0.11 -1.14 8.79 -38.98 -0.34 -1.48 16 23 C 0.08 1.49 6.63 -2.53 -0.02 1.47 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.36 7.87 5.57 -40.82 -0.23 7.64 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 28 H 0.07 0.68 6.78 -51.93 -0.35 0.33 16 29 H 0.07 0.71 6.80 -51.93 -0.35 0.35 16 30 H 0.18 1.77 8.03 -52.49 -0.42 1.35 16 31 H 0.18 1.56 3.80 -52.48 -0.20 1.36 16 32 H 0.08 1.59 7.99 -51.93 -0.41 1.17 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -32.25 305.70 -8.55 -40.80 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.24 Total: 5.82 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.24 Total: -0.96 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.06 Total: -54.19 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.47 Total: -0.69 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.25 -8.55 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019470962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.577 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds