Wall clock time and date at job start Tue Mar 31 2020 07:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1 5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 10 9 14 14 H 1.09002 * 113.61454 * 270.79954 * 13 12 10 15 15 N 1.46499 * 113.66586 * 139.93512 * 13 12 10 16 16 C 1.34776 * 119.99933 * 107.43911 * 15 13 12 17 17 O 1.21719 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.46446 * 119.99633 * 180.02562 * 16 15 13 19 19 S 1.75819 * 125.46415 * 0.02562 * 18 16 15 20 20 C 1.70603 * 91.58864 * 179.97438 * 19 18 16 21 21 C 1.33770 * 110.99418 * 0.02562 * 20 19 18 22 22 C 1.36792 * 125.45583 * 179.72100 * 18 16 15 23 23 Cl 1.73592 * 123.38242 * 0.02562 * 22 18 16 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.08993 * 113.61491 * 203.74894 * 12 10 9 28 28 H 1.09000 * 113.61138 * 334.65232 * 12 10 9 29 29 H 0.96996 * 119.99830 * 287.44329 * 15 13 12 30 30 H 1.08001 * 124.50281 * 180.02562 * 20 19 18 31 31 H 1.08008 * 122.44774 * 180.02562 * 21 20 19 32 32 H 1.09001 * 113.61695 * 25.34675 * 24 10 9 33 33 H 1.08997 * 113.61223 * 156.25258 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 0.7419 -5.0692 0.8732 14 1 -0.1643 -4.5128 1.1127 15 7 0.6549 -6.4842 1.2424 16 6 -0.2010 -6.8778 2.2062 17 8 -0.9014 -6.0575 2.7703 18 6 -0.2876 -8.2922 2.5756 19 16 0.6538 -9.5930 1.8594 20 6 -0.0945 -10.7515 2.8636 21 6 -0.9893 -10.1762 3.6747 22 6 -1.1097 -8.8123 3.5373 23 17 -2.1994 -7.8493 4.4852 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.8661 -5.0708 1.4984 28 1 1.8827 -3.7165 2.2054 29 1 1.2133 -7.1378 0.7932 30 1 0.1250 -11.8088 2.8468 31 1 -1.5709 -10.7402 4.3889 32 1 0.4632 -4.5360 -1.2561 33 1 1.8650 -5.6488 -0.9430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020183841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:01 Heat of formation + Delta-G solvation = 29.106033 kcal Electronic energy + Delta-G solvation = -18999.744527 eV Core-core repulsion = 15793.308531 eV Total energy + Delta-G solvation = -3206.435996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94733 -38.55612 -37.53771 -36.20844 -34.05626 -32.69715 -30.31212 -29.48286 -25.63881 -25.11971 -24.20260 -22.91639 -21.28122 -19.84397 -19.17183 -18.25881 -17.35352 -16.57951 -15.98856 -15.42945 -15.12474 -14.84771 -14.03250 -13.94283 -13.80013 -13.62818 -13.15709 -13.01079 -12.70803 -12.08827 -11.98961 -11.67017 -11.63715 -11.60665 -10.96756 -10.85517 -10.78177 -10.28216 -10.17031 -9.95615 -9.73136 -9.64010 -9.26847 -8.90710 -8.83368 -8.70996 -6.99705 -5.77772 -3.08072 0.07497 0.86212 1.33750 1.90579 2.26941 3.13402 3.18447 3.44669 3.48918 3.50298 4.48518 4.57255 4.71079 4.79918 5.05721 5.23311 5.28482 5.39109 5.47715 5.54421 5.62333 5.87349 5.99579 6.08148 6.18240 6.35277 6.59961 6.71246 6.77739 7.02480 7.55320 7.70091 8.23981 8.40337 9.51019 10.07139 10.41114 11.44294 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.027898 B = 0.003131 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.402607 B = 8940.189017 C = 9700.229744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.127 3.873 14 H 0.117 0.883 15 N -0.712 5.712 16 C 0.579 3.421 17 O -0.505 6.505 18 C -0.257 4.257 19 S 0.238 5.762 20 C -0.227 4.227 21 C -0.142 4.142 22 C 0.012 3.988 23 Cl -0.012 7.012 24 C -0.164 4.164 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.392 0.608 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -25.688 4.106 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.226 4.226 13 C 0.023 3.977 14 H 0.135 0.865 15 N -0.362 5.362 16 C 0.364 3.636 17 O -0.381 6.381 18 C -0.379 4.379 19 S 0.504 5.496 20 C -0.365 4.365 21 C -0.173 4.173 22 C -0.030 4.030 23 Cl 0.017 6.983 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.221 0.779 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.225 0.775 30 H 0.194 0.806 31 H 0.172 0.828 32 H 0.093 0.907 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.578 -24.873 3.449 25.161 hybrid contribution -0.821 0.404 1.159 1.477 sum 0.756 -24.469 4.608 24.911 Atomic orbital electron populations 1.69656 1.05147 1.25993 1.56942 1.24784 0.95528 0.97827 1.02552 0.86241 0.78516 0.83380 0.77862 1.21197 1.21667 1.21172 1.19218 0.91075 0.83897 1.43571 0.90972 1.42191 1.05770 0.99376 1.87058 1.20903 0.95189 0.85421 0.92604 0.91373 1.24364 0.95958 0.99708 1.02604 1.22758 1.00146 0.78865 0.95890 0.86520 1.46004 1.41240 1.10501 1.38481 1.16828 0.80887 0.85306 0.80605 1.90928 1.42637 1.52316 1.52183 1.24739 1.07439 0.99251 1.06466 1.83077 1.37148 0.94046 1.35365 1.25178 1.03102 1.05519 1.02693 1.19784 1.02033 0.92265 1.03228 1.20388 0.95379 0.92051 0.95222 1.98419 1.60249 1.70439 1.69209 1.23891 1.00913 0.99959 0.95579 0.93299 0.77943 0.91256 0.90853 0.77452 0.80553 0.82834 0.90688 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.64 5.31 -52.64 -0.28 -17.92 16 10 C 0.17 3.33 4.55 -67.12 -0.31 3.03 16 11 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 12 C -0.18 -3.23 7.69 -25.82 -0.20 -3.43 16 13 C 0.13 2.11 4.13 -67.02 -0.28 1.83 16 14 H 0.12 2.33 7.46 -51.93 -0.39 1.95 16 15 N -0.71 -9.77 5.35 -54.30 -0.29 -10.06 16 16 C 0.58 8.97 7.78 -12.96 -0.10 8.87 16 17 O -0.50 -9.85 14.68 5.17 0.08 -9.78 16 18 C -0.26 -3.14 6.45 -36.80 -0.24 -3.38 16 19 S 0.24 1.81 22.15 -107.50 -2.38 -0.58 16 20 C -0.23 -1.51 10.92 29.16 0.32 -1.19 16 21 C -0.14 -1.21 10.06 -41.38 -0.42 -1.62 16 22 C 0.01 0.14 6.40 -40.34 -0.26 -0.12 16 23 Cl -0.01 -0.16 27.24 -51.86 -1.41 -1.58 16 24 C -0.16 -2.55 7.57 -25.92 -0.20 -2.75 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.39 10.34 7.90 -40.82 -0.32 10.02 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.39 4.10 7.84 -40.82 -0.32 3.78 16 30 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -32.85 315.80 -9.28 -42.13 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.53 Total: 9.35 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.92 Total: -6.15 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.15 Total: -55.56 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.38 Total: -0.58 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.58 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.85 -9.28 -42.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020183841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.236 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds