Wall clock time and date at job start Tue Mar 31 2020 07:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1 5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 10 9 14 14 H 1.09002 * 113.61454 * 270.79954 * 13 12 10 15 15 N 1.46499 * 113.66586 * 139.93512 * 13 12 10 16 16 C 1.34776 * 119.99933 * 107.43911 * 15 13 12 17 17 O 1.21719 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.46446 * 119.99633 * 180.02562 * 16 15 13 19 19 S 1.75819 * 125.46415 * 0.02562 * 18 16 15 20 20 C 1.70603 * 91.58864 * 179.97438 * 19 18 16 21 21 C 1.33770 * 110.99418 * 0.02562 * 20 19 18 22 22 C 1.36792 * 125.45583 * 179.72100 * 18 16 15 23 23 Cl 1.73592 * 123.38242 * 0.02562 * 22 18 16 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.08993 * 113.61491 * 203.74894 * 12 10 9 28 28 H 1.09000 * 113.61138 * 334.65232 * 12 10 9 29 29 H 0.96996 * 119.99830 * 287.44329 * 15 13 12 30 30 H 1.08001 * 124.50281 * 180.02562 * 20 19 18 31 31 H 1.08008 * 122.44774 * 180.02562 * 21 20 19 32 32 H 1.09001 * 113.61695 * 25.34675 * 24 10 9 33 33 H 1.08997 * 113.61223 * 156.25258 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 0.7419 -5.0692 0.8732 14 1 -0.1643 -4.5128 1.1127 15 7 0.6549 -6.4842 1.2424 16 6 -0.2010 -6.8778 2.2062 17 8 -0.9014 -6.0575 2.7703 18 6 -0.2876 -8.2922 2.5756 19 16 0.6538 -9.5930 1.8594 20 6 -0.0945 -10.7515 2.8636 21 6 -0.9893 -10.1762 3.6747 22 6 -1.1097 -8.8123 3.5373 23 17 -2.1994 -7.8493 4.4852 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.8661 -5.0708 1.4984 28 1 1.8827 -3.7165 2.2054 29 1 1.2133 -7.1378 0.7932 30 1 0.1250 -11.8088 2.8468 31 1 -1.5709 -10.7402 4.3889 32 1 0.4632 -4.5360 -1.2561 33 1 1.8650 -5.6488 -0.9430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020183841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:00 Heat of formation + Delta-G solvation = 5.926979 kcal Electronic energy + Delta-G solvation = -19000.749646 eV Core-core repulsion = 15793.308531 eV Total energy + Delta-G solvation = -3207.441115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17554 -39.69282 -38.63357 -37.08684 -35.74503 -34.34054 -31.85091 -30.72697 -26.75413 -26.52225 -25.79266 -24.39177 -22.42865 -20.85942 -20.20287 -19.51952 -19.26958 -17.60936 -17.09869 -16.67106 -16.43912 -16.26348 -15.73952 -15.21267 -14.80816 -14.62812 -14.50143 -14.32707 -13.83349 -13.60382 -13.30731 -13.29074 -12.76173 -12.60954 -12.53259 -12.29972 -12.21787 -11.86469 -11.82739 -11.70815 -11.34442 -11.01228 -10.85335 -10.19027 -9.85479 -9.49621 -9.02799 -7.95112 -5.25051 -0.70670 0.12604 0.71673 1.18395 1.41940 1.47285 1.51070 1.57003 2.02614 2.07423 2.55856 3.36575 3.61132 3.70326 3.83181 3.88905 3.99729 4.14208 4.29512 4.35230 4.66355 4.77634 4.82113 4.93059 4.98403 5.01446 5.14489 5.22158 5.29399 5.50341 5.65241 6.26996 6.45368 7.13597 7.31722 8.08226 8.29266 9.28247 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.027898 B = 0.003131 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.402607 B = 8940.189017 C = 9700.229744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.152 3.848 11 H 0.081 0.919 12 C -0.171 4.171 13 C 0.132 3.868 14 H 0.073 0.927 15 N -0.697 5.697 16 C 0.575 3.425 17 O -0.560 6.560 18 C -0.307 4.307 19 S 0.312 5.688 20 C -0.201 4.201 21 C -0.159 4.159 22 C 0.004 3.996 23 Cl -0.043 7.043 24 C -0.137 4.137 25 H 0.251 0.749 26 H 0.371 0.629 27 H 0.106 0.894 28 H 0.034 0.966 29 H 0.412 0.588 30 H 0.219 0.781 31 H 0.173 0.827 32 H 0.063 0.937 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -29.180 3.172 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.805 3.195 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.361 5.361 10 C 0.041 3.959 11 H 0.099 0.901 12 C -0.213 4.213 13 C 0.027 3.973 14 H 0.091 0.909 15 N -0.348 5.348 16 C 0.362 3.638 17 O -0.440 6.440 18 C -0.428 4.428 19 S 0.578 5.422 20 C -0.339 4.339 21 C -0.189 4.189 22 C -0.040 4.040 23 Cl -0.014 7.014 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.125 0.875 28 H 0.053 0.947 29 H 0.249 0.751 30 H 0.236 0.764 31 H 0.190 0.810 32 H 0.082 0.918 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.188 -28.448 2.488 28.862 hybrid contribution -1.518 1.262 1.439 2.443 sum 2.670 -27.186 3.927 27.598 Atomic orbital electron populations 1.69836 1.06838 1.26191 1.59391 1.25648 0.96359 1.01424 1.03642 0.85168 0.77119 0.78880 0.78322 1.19815 1.22490 1.20484 1.19687 0.91719 0.85014 1.41210 0.89919 1.42400 1.05323 1.00910 1.87494 1.21240 0.95839 0.84538 0.94295 0.90123 1.24231 0.97700 0.99493 0.99880 1.22315 0.97956 0.80189 0.96817 0.90897 1.45713 1.41319 1.09541 1.38255 1.17328 0.79993 0.86594 0.79924 1.90896 1.44713 1.54360 1.54037 1.24561 1.10514 0.98940 1.08798 1.82781 1.34585 0.91295 1.33534 1.25753 1.00627 1.07296 1.00254 1.19917 1.03504 0.90739 1.04781 1.20791 0.94942 0.93257 0.95004 1.98403 1.61391 1.71590 1.70050 1.23741 1.00255 0.99244 0.94355 0.94068 0.79694 0.87523 0.94676 0.75090 0.76397 0.81000 0.91798 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -13.71 9.97 84.03 0.84 -12.87 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.72 -37.08 5.31 -320.44 -1.70 -38.78 16 10 C 0.15 5.75 4.55 45.52 0.21 5.95 16 11 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 12 C -0.17 -5.92 7.69 31.18 0.24 -5.68 16 13 C 0.13 4.40 4.13 45.58 0.19 4.59 16 14 H 0.07 3.13 7.46 -2.39 -0.02 3.11 16 15 N -0.70 -18.31 5.35 -443.92 -2.38 -20.69 16 16 C 0.57 17.97 7.78 86.38 0.67 18.64 16 17 O -0.56 -23.26 14.68 -4.41 -0.06 -23.32 16 18 C -0.31 -7.13 6.45 24.07 0.16 -6.98 16 19 S 0.31 3.45 22.15 -56.49 -1.25 2.20 16 20 C -0.20 -1.71 10.92 66.80 0.73 -0.98 16 21 C -0.16 -2.27 10.06 21.10 0.21 -2.06 16 22 C 0.00 0.09 6.40 21.78 0.14 0.23 16 23 Cl -0.04 -1.22 27.24 -2.72 -0.07 -1.30 16 24 C -0.14 -4.01 7.57 31.12 0.24 -3.78 16 25 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.37 20.90 7.90 -92.71 -0.73 20.17 16 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.41 7.28 7.84 -92.71 -0.73 6.55 16 30 H 0.22 0.06 8.06 -2.91 -0.02 0.03 16 31 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.13 2.54 8.12 -2.39 -0.02 2.52 16 Total: -1.00 -77.33 315.80 0.63 -76.70 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.29 Total: 24.57 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.08 Total: -7.08 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -3.80 Total: -120.65 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.25 Total: 2.20 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.07 Total: -1.30 kcal Total: -77.33 0.63 -76.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020183841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.625 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds