Wall clock time and date at job start Tue Mar 31 2020 07:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47083 * 270.00228 * 3 2 1 5 5 H 1.48497 * 109.47297 * 30.00318 * 3 2 1 6 6 H 1.48505 * 109.47389 * 150.00345 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46496 * 113.68971 * 89.19569 * 13 12 10 16 16 C 1.34784 * 119.99758 * 107.45966 * 15 13 12 17 17 O 1.21652 * 119.99792 * 0.02562 * 16 15 13 18 18 C 1.47043 * 119.99997 * 179.97438 * 16 15 13 19 19 C 1.44513 * 123.49235 * 0.02562 * 18 16 15 20 20 C 1.32689 * 113.09947 * 179.97438 * 19 18 16 21 21 S 1.75498 * 110.63038 * 359.97438 * 20 19 18 22 22 C 1.36216 * 123.49323 * 179.71075 * 18 16 15 23 23 Cl 1.73604 * 124.60435 * 0.03490 * 22 18 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 25 25 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 28 28 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 29 29 H 0.97001 * 120.00688 * 287.46664 * 15 13 12 30 30 H 1.08004 * 123.44792 * 359.97438 * 19 18 16 31 31 H 1.07996 * 124.68508 * 179.97438 * 20 19 18 32 32 H 1.09002 * 113.61445 * 139.98212 * 24 13 12 33 33 H 1.09002 * 113.61408 * 270.79943 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1305 -6.4023 0.9530 15 7 3.1217 -6.3290 0.1757 16 6 3.5042 -7.4654 0.7915 17 8 2.7900 -7.9684 1.6381 18 6 4.7841 -8.0976 0.4391 19 6 5.6893 -7.5661 -0.5542 20 6 6.7837 -8.3006 -0.7073 21 16 6.7534 -9.6871 0.3683 22 6 5.2424 -9.2416 1.0194 23 17 4.4003 -10.1275 2.2522 24 6 1.2597 -4.8285 -0.5971 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 1.1221 -4.1590 1.9401 28 1 2.9275 -4.3559 1.9127 29 1 3.6911 -5.9281 -0.4995 30 1 5.4949 -6.6635 -1.1145 31 1 7.5828 -8.0763 -1.3983 32 1 1.5905 -5.1205 -1.5938 33 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020681583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:55 Heat of formation + Delta-G solvation = 27.955205 kcal Electronic energy + Delta-G solvation = -18997.713824 eV Core-core repulsion = 15791.227925 eV Total energy + Delta-G solvation = -3206.485899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.15948 -38.36066 -37.10308 -36.61714 -34.03406 -32.54713 -30.05271 -29.73557 -25.74196 -25.11617 -24.17733 -22.28408 -21.80057 -19.75636 -18.96127 -18.75934 -17.20874 -16.72676 -16.00048 -15.15828 -14.87907 -14.85705 -14.27683 -13.96858 -13.82924 -13.57698 -13.43476 -13.25047 -12.66577 -12.08580 -11.85285 -11.82969 -11.64964 -11.49122 -11.17278 -10.91290 -10.78659 -10.32844 -10.22455 -9.93035 -9.77605 -9.57005 -9.18217 -8.98257 -8.90575 -8.70054 -6.99542 -5.81230 -3.10293 0.27944 0.68344 1.35704 1.63357 1.93141 3.23845 3.27807 3.40728 3.46116 3.47939 4.39610 4.56389 4.70549 4.85569 5.05690 5.21644 5.31881 5.44216 5.49261 5.52004 5.71577 5.86221 5.91797 6.14132 6.25086 6.32481 6.50554 6.63179 6.69473 7.07574 7.58067 7.65922 8.26080 8.37157 9.48437 10.05839 10.40208 11.41106 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.002971 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.842542 B = 9420.643416 C =10045.032045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.097 0.903 15 N -0.698 5.698 16 C 0.573 3.427 17 O -0.524 6.524 18 C -0.150 4.150 19 C -0.101 4.101 20 C -0.225 4.225 21 S 0.219 5.781 22 C -0.124 4.124 23 Cl 0.020 6.980 24 C -0.159 4.159 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.399 0.601 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.064 0.936 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.100 -21.208 -1.936 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.115 0.885 15 N -0.349 5.349 16 C 0.358 3.642 17 O -0.401 6.401 18 C -0.169 4.169 19 C -0.130 4.130 20 C -0.361 4.361 21 S 0.482 5.518 22 C -0.271 4.271 23 Cl 0.049 6.951 24 C -0.199 4.199 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.234 0.766 30 H 0.176 0.824 31 H 0.195 0.805 32 H 0.082 0.918 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.590 -22.640 -0.961 26.951 hybrid contribution -0.635 2.315 -0.447 2.441 sum 13.955 -20.325 -1.408 24.695 Atomic orbital electron populations 1.69658 1.05153 1.25800 1.57334 1.24768 0.95522 0.97803 1.02731 0.86193 0.78701 0.83790 0.77512 1.21673 1.21731 1.20716 1.19289 0.91053 0.84227 1.43104 0.91118 1.42400 1.05789 0.99847 1.86954 1.21650 0.95015 0.85188 0.92720 0.90898 1.24339 1.02054 0.95183 1.00236 1.21829 0.84726 0.94075 0.98204 0.88462 1.45535 1.22284 1.25169 1.41886 1.17370 0.84548 0.80646 0.81653 1.90845 1.53974 1.63383 1.31879 1.20390 0.98496 0.96892 1.01097 1.21184 0.92846 1.01137 0.97787 1.25533 1.03951 1.00021 1.06561 1.83207 1.11564 1.25067 1.31943 1.25282 1.01410 0.99529 1.00888 1.98418 1.75745 1.72149 1.48789 1.23864 1.01664 0.97182 0.97163 0.93406 0.77986 0.89542 0.92392 0.76612 0.82426 0.80534 0.91763 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.46 5.40 -52.54 -0.28 -17.75 16 10 C 0.17 3.15 4.37 -67.02 -0.29 2.86 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.18 -3.10 7.69 -25.82 -0.20 -3.30 16 13 C 0.12 1.77 4.32 -67.12 -0.29 1.48 16 14 H 0.10 1.56 7.46 -51.93 -0.39 1.17 16 15 N -0.70 -9.18 5.25 -54.21 -0.28 -9.47 16 16 C 0.57 8.26 7.79 -12.69 -0.10 8.17 16 17 O -0.52 -9.22 14.51 5.23 0.08 -9.15 16 18 C -0.15 -1.75 5.98 -104.58 -0.63 -2.37 16 19 C -0.10 -0.84 9.90 -39.00 -0.39 -1.23 16 20 C -0.23 -1.51 11.11 28.84 0.32 -1.19 16 21 S 0.22 1.63 23.02 -107.50 -2.47 -0.84 16 22 C -0.12 -1.39 6.87 30.00 0.21 -1.18 16 23 Cl 0.02 0.25 27.20 -51.86 -1.41 -1.17 16 24 C -0.16 -2.48 7.57 -25.92 -0.20 -2.68 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 10.06 7.92 -40.82 -0.32 9.74 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.40 4.26 7.25 -40.82 -0.30 3.97 16 30 H 0.16 0.99 7.10 -52.48 -0.37 0.62 16 31 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -32.31 314.96 -9.20 -41.51 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.46 Total: 8.92 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.81 Total: -6.73 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.16 Total: -54.35 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.47 Total: -0.84 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.41 Total: -1.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.31 -9.20 -41.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020681583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.462 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds