Wall clock time and date at job start Tue Mar 31 2020 07:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08998 * 112.84936 * 23.80080 * 10 9 7 12 12 C 1.53777 * 113.61347 * 155.00360 * 10 9 7 13 13 C 1.53777 * 87.08256 * 139.97999 * 12 10 9 14 14 H 1.08994 * 113.61945 * 89.19439 * 13 12 10 15 15 N 1.46505 * 113.61272 * 220.01750 * 13 12 10 16 16 C 1.34775 * 120.00156 * 204.99720 * 15 13 12 17 17 O 1.21720 * 119.99541 * 359.97438 * 16 15 13 18 18 C 1.46432 * 120.00217 * 180.02562 * 16 15 13 19 19 S 1.75834 * 125.46112 * 359.68951 * 18 16 15 20 20 C 1.70613 * 91.58498 * 179.97438 * 19 18 16 21 21 C 1.33776 * 110.99963 * 0.32731 * 20 19 18 22 22 C 1.36798 * 125.46502 * 180.02562 * 18 16 15 23 23 Cl 1.73599 * 123.37548 * 359.97327 * 22 18 16 24 24 C 1.53780 * 87.08058 * 334.56497 * 13 12 10 25 25 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 27 27 H 1.09003 * 113.60950 * 254.52753 * 12 10 9 28 28 H 1.09001 * 113.61444 * 25.42727 * 12 10 9 29 29 H 0.97005 * 119.99905 * 25.00282 * 15 13 12 30 30 H 1.07999 * 124.50228 * 180.02562 * 20 19 18 31 31 H 1.07993 * 122.44959 * 179.72320 * 21 20 19 32 32 H 1.09007 * 113.61589 * 270.88511 * 24 13 12 33 33 H 1.08995 * 113.61560 * 139.98295 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5259 -3.2963 -0.4154 12 6 5.5234 -2.3650 -0.6119 13 6 5.9865 -3.3107 0.5087 14 1 5.9148 -4.3663 0.2468 15 7 7.2881 -2.9529 1.0781 16 6 8.0481 -3.8968 1.6678 17 8 7.6528 -5.0465 1.7279 18 6 9.3489 -3.5391 2.2374 19 16 10.0604 -1.9313 2.2252 20 6 11.4476 -2.4873 3.0483 21 6 11.3630 -3.7987 3.2987 22 6 10.2082 -4.4036 2.8585 23 17 9.8754 -6.0943 3.0692 24 6 4.7925 -2.7954 1.3296 25 1 -0.4850 0.8402 -0.0004 26 1 3.8646 -0.3622 -0.0056 27 1 5.6066 -2.7963 -1.6095 28 1 5.9525 -1.3652 -0.5448 29 1 7.6029 -2.0366 1.0306 30 1 12.2851 -1.8644 3.3258 31 1 12.1441 -4.3428 3.8087 32 1 5.0219 -1.9133 1.9275 33 1 4.2858 -3.5742 1.8994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022124075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:04 Heat of formation + Delta-G solvation = 31.248327 kcal Electronic energy + Delta-G solvation = -18931.303965 eV Core-core repulsion = 15724.960866 eV Total energy + Delta-G solvation = -3206.343099 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.08778 -38.65374 -37.65344 -36.30257 -34.25279 -32.82484 -30.70954 -29.94624 -25.75779 -25.27082 -24.36642 -22.48291 -20.96638 -20.09648 -19.57123 -18.70755 -17.44112 -16.73558 -16.23310 -15.59998 -15.25470 -14.77575 -14.34056 -14.01676 -13.90208 -13.75008 -13.31280 -13.07455 -12.71693 -12.31483 -12.08735 -11.81017 -11.75941 -11.66057 -11.08936 -11.05099 -10.80975 -10.53077 -10.33948 -10.14852 -9.89842 -9.61435 -9.35488 -8.98459 -8.90893 -8.85161 -7.31607 -5.81393 -3.17639 -0.00325 0.79276 1.27658 1.82960 2.17744 2.99063 3.04176 3.32801 3.35058 3.41535 4.40842 4.54202 4.62327 4.70869 4.89460 5.07029 5.18645 5.22174 5.38762 5.47175 5.54048 5.59749 5.73911 5.96725 6.07032 6.15511 6.29695 6.51379 6.56910 6.90103 7.40710 7.94789 8.07749 8.38075 9.15175 9.87406 10.06612 11.36781 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.003219 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.232009 B = 8697.273033 C = 9479.380498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.120 3.880 14 H 0.116 0.884 15 N -0.710 5.710 16 C 0.584 3.416 17 O -0.511 6.511 18 C -0.262 4.262 19 S 0.243 5.757 20 C -0.225 4.225 21 C -0.143 4.143 22 C 0.015 3.985 23 Cl -0.014 7.014 24 C -0.176 4.176 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.395 0.605 30 H 0.178 0.822 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.921 -4.958 5.204 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.108 0.892 12 C -0.202 4.202 13 C 0.016 3.984 14 H 0.134 0.866 15 N -0.360 5.360 16 C 0.369 3.631 17 O -0.388 6.388 18 C -0.383 4.383 19 S 0.509 5.491 20 C -0.363 4.363 21 C -0.174 4.174 22 C -0.028 4.028 23 Cl 0.015 6.985 24 C -0.218 4.218 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.229 0.771 30 H 0.195 0.805 31 H 0.172 0.828 32 H 0.097 0.903 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 25.843 -4.566 4.688 26.659 hybrid contribution 1.404 0.284 0.767 1.625 sum 27.247 -4.282 5.455 28.116 Atomic orbital electron populations 1.69708 1.05134 1.25900 1.57163 1.24702 0.95259 0.97268 1.01847 0.86546 0.79164 0.84989 0.77771 1.21015 1.21675 1.20391 1.19151 0.80573 0.94878 1.43322 0.88992 1.42702 1.04125 1.01781 1.88770 1.21329 0.89259 0.90380 0.92702 0.89219 1.23905 0.99254 0.99086 0.97968 1.22557 0.80138 1.00293 0.95415 0.86636 1.45922 1.20180 1.11065 1.58826 1.16785 0.82233 0.85734 0.78398 1.90888 1.71871 1.18756 1.57276 1.24684 1.02028 0.98298 1.13333 1.83211 1.08735 1.05918 1.51220 1.25213 1.04901 0.99668 1.06526 1.19779 0.98409 0.94324 1.04923 1.20366 0.94429 0.88199 0.99804 1.98411 1.95003 1.09813 1.95265 1.24321 0.96114 1.01009 1.00394 0.92984 0.80489 0.90914 0.90185 0.77107 0.80481 0.82790 0.90279 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 21.55 27.73 -169.99 -4.71 16.84 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 N -0.73 -16.73 5.21 -52.63 -0.27 -17.01 16 10 C 0.18 3.20 4.48 -67.12 -0.30 2.90 16 11 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 12 C -0.16 -2.31 7.58 -25.92 -0.20 -2.51 16 13 C 0.12 1.69 4.24 -67.12 -0.28 1.41 16 14 H 0.12 1.70 7.46 -51.93 -0.39 1.31 16 15 N -0.71 -8.89 5.35 -54.40 -0.29 -9.18 16 16 C 0.58 8.10 7.78 -12.96 -0.10 8.00 16 17 O -0.51 -8.68 14.68 5.17 0.08 -8.61 16 18 C -0.26 -2.96 6.45 -36.81 -0.24 -3.19 16 19 S 0.24 1.80 22.15 -107.50 -2.38 -0.58 16 20 C -0.23 -1.42 10.92 29.17 0.32 -1.10 16 21 C -0.14 -1.13 10.06 -41.38 -0.42 -1.54 16 22 C 0.01 0.16 6.39 -40.34 -0.26 -0.10 16 23 Cl -0.01 -0.17 27.24 -51.86 -1.41 -1.58 16 24 C -0.18 -2.91 7.68 -25.92 -0.20 -3.11 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.36 8.01 5.79 -40.82 -0.24 7.78 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.39 4.05 7.84 -40.82 -0.32 3.73 16 30 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 31 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -32.93 312.80 -8.93 -41.85 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.49 Total: 8.00 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.93 Total: -6.26 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.21 Total: -54.38 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.41 Total: -1.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.93 -8.93 -41.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022124075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.102 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds