Wall clock time and date at job start Tue Mar 31 2020 07:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08998 * 112.84936 * 23.80080 * 10 9 7 12 12 C 1.53777 * 113.61347 * 155.00360 * 10 9 7 13 13 C 1.53777 * 87.08256 * 139.97999 * 12 10 9 14 14 H 1.08994 * 113.61945 * 89.19439 * 13 12 10 15 15 N 1.46505 * 113.61272 * 220.01750 * 13 12 10 16 16 C 1.34775 * 120.00156 * 204.99720 * 15 13 12 17 17 O 1.21720 * 119.99541 * 359.97438 * 16 15 13 18 18 C 1.46432 * 120.00217 * 180.02562 * 16 15 13 19 19 S 1.75834 * 125.46112 * 359.68951 * 18 16 15 20 20 C 1.70613 * 91.58498 * 179.97438 * 19 18 16 21 21 C 1.33776 * 110.99963 * 0.32731 * 20 19 18 22 22 C 1.36798 * 125.46502 * 180.02562 * 18 16 15 23 23 Cl 1.73599 * 123.37548 * 359.97327 * 22 18 16 24 24 C 1.53780 * 87.08058 * 334.56497 * 13 12 10 25 25 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 27 27 H 1.09003 * 113.60950 * 254.52753 * 12 10 9 28 28 H 1.09001 * 113.61444 * 25.42727 * 12 10 9 29 29 H 0.97005 * 119.99905 * 25.00282 * 15 13 12 30 30 H 1.07999 * 124.50228 * 180.02562 * 20 19 18 31 31 H 1.07993 * 122.44959 * 179.72320 * 21 20 19 32 32 H 1.09007 * 113.61589 * 270.88511 * 24 13 12 33 33 H 1.08995 * 113.61560 * 139.98295 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5259 -3.2963 -0.4154 12 6 5.5234 -2.3650 -0.6119 13 6 5.9865 -3.3107 0.5087 14 1 5.9148 -4.3663 0.2468 15 7 7.2881 -2.9529 1.0781 16 6 8.0481 -3.8968 1.6678 17 8 7.6528 -5.0465 1.7279 18 6 9.3489 -3.5391 2.2374 19 16 10.0604 -1.9313 2.2252 20 6 11.4476 -2.4873 3.0483 21 6 11.3630 -3.7987 3.2987 22 6 10.2082 -4.4036 2.8585 23 17 9.8754 -6.0943 3.0692 24 6 4.7925 -2.7954 1.3296 25 1 -0.4850 0.8402 -0.0004 26 1 3.8646 -0.3622 -0.0056 27 1 5.6066 -2.7963 -1.6095 28 1 5.9525 -1.3652 -0.5448 29 1 7.6029 -2.0366 1.0306 30 1 12.2851 -1.8644 3.3258 31 1 12.1441 -4.3428 3.8087 32 1 5.0219 -1.9133 1.9275 33 1 4.2858 -3.5742 1.8994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022124075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:04 Heat of formation + Delta-G solvation = 8.271247 kcal Electronic energy + Delta-G solvation = -18932.300326 eV Core-core repulsion = 15724.960866 eV Total energy + Delta-G solvation = -3207.339460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18300 -39.69615 -38.63852 -37.08601 -35.87390 -34.36199 -32.53190 -30.81922 -26.83600 -26.55776 -25.75714 -23.84383 -22.15202 -21.32412 -20.44329 -19.84688 -19.19986 -17.75255 -17.16698 -16.68518 -16.36462 -16.23392 -15.80800 -15.29783 -14.70068 -14.66239 -14.55268 -14.48117 -13.80137 -13.72698 -13.62043 -13.33513 -12.88524 -12.52851 -12.33127 -12.28785 -12.10544 -11.92342 -11.85607 -11.73297 -11.65461 -11.02033 -10.90059 -10.20622 -9.87706 -9.51841 -9.27815 -8.01271 -5.35468 -0.71170 0.11979 0.70514 1.17632 1.39130 1.41447 1.44535 1.51552 2.00878 2.05287 2.50518 3.28421 3.59140 3.62425 3.79583 3.80229 3.99362 4.07667 4.17072 4.25107 4.64343 4.72108 4.83563 4.87631 4.92713 4.99070 5.06639 5.14189 5.27560 5.58707 5.78492 6.23207 6.41808 7.08036 7.09032 7.84052 8.04601 9.20393 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.003219 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.232009 B = 8697.273033 C = 9479.380498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.246 1.246 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.737 5.737 10 C 0.154 3.846 11 H 0.077 0.923 12 C -0.139 4.139 13 C 0.136 3.864 14 H 0.109 0.891 15 N -0.701 5.701 16 C 0.581 3.419 17 O -0.553 6.553 18 C -0.306 4.306 19 S 0.296 5.704 20 C -0.202 4.202 21 C -0.158 4.158 22 C 0.007 3.993 23 Cl -0.038 7.038 24 C -0.172 4.172 25 H 0.258 0.742 26 H 0.369 0.631 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.408 0.592 30 H 0.216 0.784 31 H 0.173 0.827 32 H 0.080 0.920 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.885 -2.773 5.378 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.368 4.368 8 H 0.072 0.928 9 N -0.378 5.378 10 C 0.044 3.956 11 H 0.095 0.905 12 C -0.178 4.178 13 C 0.031 3.969 14 H 0.127 0.873 15 N -0.352 5.352 16 C 0.368 3.632 17 O -0.433 6.433 18 C -0.427 4.427 19 S 0.562 5.438 20 C -0.340 4.340 21 C -0.188 4.188 22 C -0.037 4.037 23 Cl -0.009 7.009 24 C -0.214 4.214 25 H 0.066 0.934 26 H 0.203 0.797 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.245 0.755 30 H 0.233 0.767 31 H 0.191 0.809 32 H 0.099 0.901 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 29.888 -2.390 4.861 30.375 hybrid contribution 0.224 -0.452 0.749 0.903 sum 30.112 -2.843 5.610 30.762 Atomic orbital electron populations 1.69911 1.07385 1.26759 1.59621 1.25600 0.96169 1.01623 1.02506 0.85342 0.78726 0.79061 0.78220 1.20161 1.22583 1.17027 1.19108 0.82860 0.93461 1.41388 0.92770 1.42624 1.02319 1.03684 1.89176 1.21612 0.90904 0.88410 0.94715 0.90487 1.23718 0.95326 1.00205 0.98554 1.22202 0.80254 0.99949 0.94515 0.87340 1.45737 1.19290 1.11714 1.58433 1.17161 0.83071 0.85204 0.77755 1.90861 1.73113 1.20425 1.58884 1.24564 1.01579 1.01129 1.15416 1.83013 1.08107 1.02555 1.50078 1.25729 1.05128 0.99285 1.03890 1.19938 0.98005 0.95119 1.05782 1.20734 0.95586 0.87188 1.00161 1.98398 1.95232 1.11877 1.95384 1.24195 0.97040 1.00745 0.99398 0.93364 0.79686 0.89254 0.88270 0.75507 0.76712 0.80928 0.90146 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.24 13.97 21.65 0.30 -62.93 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 44.05 27.73 68.60 1.90 45.95 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 7 C -0.24 -13.37 10.45 84.03 0.88 -12.49 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.74 -32.87 5.21 -320.44 -1.67 -34.54 16 10 C 0.15 5.50 4.48 45.52 0.20 5.71 16 11 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 12 C -0.14 -3.59 7.58 31.12 0.24 -3.35 16 13 C 0.14 3.64 4.24 45.52 0.19 3.83 16 14 H 0.11 3.14 7.46 -2.39 -0.02 3.12 16 15 N -0.70 -16.17 5.35 -444.23 -2.38 -18.55 16 16 C 0.58 15.60 7.78 86.38 0.67 16.27 16 17 O -0.55 -19.01 14.68 -4.41 -0.06 -19.07 16 18 C -0.31 -6.37 6.45 24.07 0.16 -6.22 16 19 S 0.30 3.27 22.15 -56.49 -1.25 2.02 16 20 C -0.20 -1.65 10.92 66.81 0.73 -0.92 16 21 C -0.16 -2.03 10.06 21.10 0.21 -1.82 16 22 C 0.01 0.15 6.39 21.78 0.14 0.29 16 23 Cl -0.04 -0.92 27.24 -2.72 -0.07 -0.99 16 24 C -0.17 -5.56 7.68 31.12 0.24 -5.32 16 25 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 26 H 0.37 15.33 5.79 -92.71 -0.54 14.79 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 29 H 0.41 7.10 7.84 -92.70 -0.73 6.37 16 30 H 0.22 0.11 8.06 -2.91 -0.02 0.08 16 31 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.80 312.80 0.74 -74.06 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.16 Total: 21.57 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.12 Total: -7.51 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.74 Total: -116.02 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.25 Total: 2.02 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.07 Total: -0.99 kcal Total: -74.80 0.74 -74.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022124075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.335 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds