Wall clock time and date at job start Tue Mar 31 2020 07:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99789 * 2 1 4 4 H 1.48500 * 109.46836 * 269.99852 * 3 2 1 5 5 H 1.48497 * 109.47225 * 29.99936 * 3 2 1 6 6 H 1.48503 * 109.46549 * 149.99965 * 3 2 1 7 7 C 1.38811 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00061 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 N 1.46499 * 113.61191 * 220.09091 * 13 12 10 16 16 C 1.34783 * 119.99531 * 252.49880 * 15 13 12 17 17 O 1.21656 * 120.00410 * 0.02562 * 16 15 13 18 18 C 1.47044 * 119.99543 * 180.02562 * 16 15 13 19 19 C 1.44501 * 123.49455 * 359.72802 * 18 16 15 20 20 C 1.32700 * 113.09830 * 179.76665 * 19 18 16 21 21 S 1.75491 * 110.62915 * 0.48394 * 20 19 18 22 22 C 1.36228 * 123.48813 * 180.02562 * 18 16 15 23 23 Cl 1.73594 * 124.60650 * 0.02562 * 22 18 16 24 24 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 25 25 H 0.96993 * 120.00080 * 359.97438 * 1 2 3 26 26 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 28 28 H 1.08994 * 113.66446 * 254.45762 * 12 10 9 29 29 H 0.96997 * 120.00777 * 72.49903 * 15 13 12 30 30 H 1.07995 * 123.45120 * 0.02562 * 19 18 16 31 31 H 1.07993 * 124.68275 * 180.19315 * 20 19 18 32 32 H 1.09002 * 113.61445 * 139.98212 * 24 13 12 33 33 H 1.09002 * 113.61408 * 270.79943 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 1 3.5282 -3.2976 0.4068 12 6 4.7899 -2.7944 -1.3418 13 6 5.9873 -3.3087 -0.5254 14 1 5.9170 -4.3649 -0.2652 15 7 7.2865 -2.9477 -1.0981 16 6 8.0464 -3.8894 -1.6916 17 8 7.6533 -5.0391 -1.7522 18 6 9.3507 -3.5271 -2.2659 19 6 9.8880 -2.1860 -2.2413 20 6 11.0817 -2.0928 -2.8135 21 16 11.5979 -3.6547 -3.4247 22 6 10.1750 -4.4200 -2.8815 23 17 9.8238 -6.1078 -3.0856 24 6 5.5259 -2.3655 0.5982 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3622 0.0014 27 1 5.0158 -1.9110 -1.9391 28 1 4.2829 -3.5733 -1.9112 29 1 7.5999 -2.0310 -1.0501 30 1 9.3729 -1.3463 -1.7987 31 1 11.6540 -1.1808 -2.8961 32 1 5.6129 -2.7982 1.5948 33 1 5.9541 -1.3654 0.5320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022810254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:59 Heat of formation + Delta-G solvation = 30.574622 kcal Electronic energy + Delta-G solvation = -18958.092433 eV Core-core repulsion = 15751.720120 eV Total energy + Delta-G solvation = -3206.372313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.16283 -38.44290 -37.17796 -36.66481 -34.20710 -32.68887 -30.52027 -29.90854 -25.95148 -25.24363 -24.05029 -22.25250 -21.30699 -19.98706 -19.34019 -18.75044 -17.49653 -16.90531 -16.22096 -15.16880 -15.14401 -14.74576 -14.32942 -14.19260 -13.83762 -13.68648 -13.33782 -13.20000 -12.72045 -12.25939 -12.06407 -11.87498 -11.78713 -11.54942 -11.22834 -11.06281 -10.78355 -10.46276 -10.31480 -10.16908 -9.76849 -9.60179 -9.23070 -9.03497 -8.94617 -8.75237 -7.30902 -5.81004 -3.17192 0.23169 0.63793 1.30974 1.57654 1.88918 3.19816 3.24981 3.32797 3.35179 3.41661 4.34211 4.54447 4.64712 4.77991 4.94477 5.10431 5.22129 5.25491 5.39708 5.45344 5.60549 5.66366 5.74520 6.00780 6.09203 6.17637 6.36007 6.53179 6.61331 6.92974 7.52378 7.95295 8.20097 8.38541 9.15666 9.87893 10.07238 11.37217 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.003041 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.531873 B = 9204.095129 C = 9916.083917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.089 0.911 12 C -0.176 4.176 13 C 0.120 3.880 14 H 0.114 0.886 15 N -0.707 5.707 16 C 0.571 3.429 17 O -0.523 6.523 18 C -0.151 4.151 19 C -0.101 4.101 20 C -0.226 4.226 21 S 0.220 5.780 22 C -0.124 4.124 23 Cl 0.021 6.979 24 C -0.162 4.162 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.397 0.603 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.071 0.929 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.528 -5.584 -5.755 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.374 5.374 10 C 0.063 3.937 11 H 0.107 0.893 12 C -0.218 4.218 13 C 0.016 3.984 14 H 0.132 0.868 15 N -0.357 5.357 16 C 0.356 3.644 17 O -0.400 6.400 18 C -0.170 4.170 19 C -0.130 4.130 20 C -0.361 4.361 21 S 0.484 5.516 22 C -0.271 4.271 23 Cl 0.050 6.950 24 C -0.202 4.202 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.232 0.768 30 H 0.174 0.826 31 H 0.194 0.806 32 H 0.089 0.911 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.188 -7.109 -6.546 29.798 hybrid contribution -0.590 2.158 0.676 2.337 sum 27.598 -4.951 -5.870 28.647 Atomic orbital electron populations 1.69703 1.05127 1.25898 1.57217 1.24702 0.95260 0.97259 1.01878 0.86543 0.79178 0.84999 0.77746 1.21070 1.21675 1.20356 1.19152 0.80596 0.94874 1.43258 0.89003 1.42698 1.04113 1.01796 1.88776 1.21360 0.89268 0.90320 0.92765 0.89325 1.24336 0.96192 1.00953 1.00332 1.22502 0.80547 1.00134 0.95260 0.86848 1.45878 1.20009 1.11485 1.58337 1.17425 0.83059 0.85522 0.78405 1.90849 1.72586 1.18985 1.57626 1.20418 0.97809 0.92882 1.05917 1.21158 0.95385 0.95627 1.00856 1.25535 1.01314 1.01848 1.07441 1.83222 1.14663 0.98550 1.55186 1.25298 1.01990 0.92962 1.06859 1.98421 1.94149 1.07173 1.95251 1.23892 0.99224 0.99106 0.97932 0.92987 0.80495 0.90330 0.91682 0.76793 0.82575 0.80570 0.91077 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 21.61 27.74 -169.99 -4.71 16.89 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 7 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.73 -16.81 5.21 -52.54 -0.27 -17.09 16 10 C 0.17 3.21 4.49 -67.02 -0.30 2.91 16 11 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 12 C -0.18 -2.91 7.68 -25.82 -0.20 -3.11 16 13 C 0.12 1.70 4.24 -67.12 -0.28 1.41 16 14 H 0.11 1.70 7.47 -51.93 -0.39 1.31 16 15 N -0.71 -8.69 5.33 -54.21 -0.29 -8.98 16 16 C 0.57 7.90 7.79 -12.69 -0.10 7.80 16 17 O -0.52 -8.92 14.51 5.23 0.08 -8.85 16 18 C -0.15 -1.70 5.98 -104.59 -0.63 -2.32 16 19 C -0.10 -0.80 9.90 -39.00 -0.39 -1.18 16 20 C -0.23 -1.42 11.11 28.85 0.32 -1.10 16 21 S 0.22 1.57 23.02 -107.50 -2.47 -0.90 16 22 C -0.12 -1.34 6.87 30.01 0.21 -1.14 16 23 Cl 0.02 0.25 27.20 -51.86 -1.41 -1.16 16 24 C -0.16 -2.33 7.58 -25.92 -0.20 -2.52 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.36 8.04 5.78 -40.82 -0.24 7.81 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.40 3.83 7.27 -40.82 -0.30 3.54 16 30 H 0.16 0.88 7.10 -52.49 -0.37 0.51 16 31 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -33.26 311.97 -8.84 -42.11 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.42 Total: 7.83 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.82 Total: -6.27 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.21 Total: -54.35 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.41 Total: -1.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.26 -8.84 -42.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022810254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.682 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds