Wall clock time and date at job start Tue Mar 31 2020 07:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48499 * 109.46888 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.46899 * 29.99863 * 3 2 1 6 6 H 1.48498 * 109.47085 * 149.99929 * 3 2 1 7 7 C 1.38814 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99811 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49477 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.12018 * 155.35955 * 10 9 7 12 12 C 1.52996 * 113.74531 * 137.95122 * 11 10 9 13 13 N 1.46498 * 109.47059 * 176.92398 * 12 11 10 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11 15 15 O 1.21723 * 120.00033 * 0.28033 * 14 13 12 16 16 C 1.46440 * 120.00268 * 180.27577 * 14 13 12 17 17 S 1.75835 * 125.45681 * 0.03202 * 16 14 13 18 18 C 1.70611 * 91.58321 * 179.97438 * 17 16 14 19 19 C 1.33778 * 111.00001 * 359.97438 * 18 17 16 20 20 C 1.36789 * 125.46349 * 179.71744 * 16 14 13 21 21 Cl 1.73595 * 123.37945 * 0.02562 * 20 16 14 22 22 C 1.47815 * 134.45727 * 359.86623 * 9 7 2 23 23 H 0.97002 * 120.00091 * 0.02562 * 1 2 3 24 24 H 1.08997 * 113.77139 * 41.05452 * 10 9 7 25 25 H 1.08999 * 113.76764 * 269.66017 * 10 9 7 26 26 H 1.08994 * 113.73874 * 269.15902 * 11 10 9 27 27 H 1.09004 * 109.47066 * 56.92666 * 12 11 10 28 28 H 1.08994 * 109.46974 * 296.92814 * 12 11 10 29 29 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 30 30 H 1.07998 * 124.50248 * 179.97438 * 18 17 16 31 31 H 1.07993 * 122.45048 * 180.02562 * 19 18 17 32 32 H 1.09005 * 113.77113 * 90.37828 * 22 9 7 33 33 H 1.08998 * 113.83823 * 318.92242 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0015 11 6 0.3474 -4.0833 0.6398 12 6 -0.3636 -5.3136 0.0729 13 7 -1.6196 -5.5282 0.7958 14 6 -2.4215 -6.5587 0.4623 15 8 -2.0998 -7.3142 -0.4363 16 6 -3.6800 -6.7697 1.1808 17 16 -4.2834 -5.7707 2.4960 18 6 -5.6823 -6.7351 2.6497 19 6 -5.6752 -7.7352 1.7612 20 6 -4.5773 -7.7719 0.9326 21 17 -4.3514 -8.9721 -0.3011 22 6 -0.1058 -2.7571 0.0024 23 1 -0.4850 0.8401 -0.0004 24 1 2.5628 -4.0327 0.6529 25 1 1.8310 -4.2346 -0.9993 26 1 0.3607 -4.0647 1.7295 27 1 0.2762 -6.1885 0.1886 28 1 -0.5754 -5.1557 -0.9846 29 1 -1.8762 -4.9260 1.5117 30 1 -6.4691 -6.5614 3.3688 31 1 -6.4746 -8.4584 1.6963 32 1 -0.5320 -2.8718 -0.9943 33 1 -0.7184 -2.1402 0.6598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031690948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:02 Heat of formation + Delta-G solvation = 49.235108 kcal Electronic energy + Delta-G solvation = -18969.349734 eV Core-core repulsion = 15763.786601 eV Total energy + Delta-G solvation = -3205.563134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.77871 -38.32288 -37.68679 -36.19875 -34.43021 -32.21516 -30.45135 -28.66700 -26.18441 -24.89515 -24.71028 -22.25207 -21.23405 -19.84321 -19.33464 -18.32114 -16.80448 -16.55989 -15.83153 -15.47005 -15.29834 -14.86466 -14.16213 -13.86133 -13.77269 -13.66593 -13.26904 -13.04388 -12.82136 -12.34142 -11.65479 -11.52414 -11.42136 -11.34177 -11.01853 -10.95127 -10.72321 -10.59875 -10.06297 -9.78701 -9.76872 -9.45224 -9.24569 -8.84711 -8.80822 -8.76312 -6.89184 -5.78113 -3.10175 0.12549 0.92478 1.41317 1.94652 2.28939 3.11936 3.18594 3.38497 3.43413 3.45131 4.44275 4.53970 4.75013 4.84775 5.14272 5.28368 5.32026 5.36335 5.58475 5.63649 5.68446 5.81142 6.01423 6.22057 6.33074 6.50513 6.61428 6.71794 7.20063 7.33327 7.51249 7.54081 7.96731 8.19862 9.03536 9.69754 10.58635 11.39126 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.003130 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.840727 B = 8943.848297 C = 9656.054877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.155 4.155 12 C 0.132 3.868 13 N -0.716 5.716 14 C 0.582 3.418 15 O -0.515 6.515 16 C -0.261 4.261 17 S 0.253 5.747 18 C -0.228 4.228 19 C -0.144 4.144 20 C 0.013 3.987 21 Cl -0.017 7.017 22 C 0.168 3.832 23 H 0.253 0.747 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.398 0.602 30 H 0.177 0.823 31 H 0.153 0.847 32 H 0.028 0.972 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.597 -15.432 7.054 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.003 3.997 11 C -0.175 4.175 12 C 0.008 3.992 13 N -0.367 5.367 14 C 0.366 3.634 15 O -0.392 6.392 16 C -0.383 4.383 17 S 0.519 5.481 18 C -0.366 4.366 19 C -0.175 4.175 20 C -0.029 4.029 21 Cl 0.012 6.988 22 C 0.043 3.957 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.195 0.805 31 H 0.171 0.829 32 H 0.046 0.954 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.739 -14.413 7.052 19.881 hybrid contribution -0.424 -0.135 -0.567 0.721 sum -12.163 -14.548 6.485 20.041 Atomic orbital electron populations 1.69809 1.05010 1.25320 1.56784 1.24775 0.95681 0.97505 1.02495 0.86123 0.78632 0.83433 0.77599 1.21625 1.21626 1.20620 1.19037 0.90302 0.82010 1.43704 0.90243 1.45978 1.02426 0.99299 1.86168 1.22480 0.93892 0.86455 0.96911 1.23832 0.98339 0.94694 1.00601 1.21514 0.83022 0.98250 0.96381 1.45929 1.22683 1.29563 1.38531 1.16767 0.81935 0.81650 0.83013 1.90881 1.73208 1.45324 1.29836 1.24682 1.02553 1.03953 1.07095 1.83342 1.11293 1.26523 1.26947 1.25230 1.04903 1.00968 1.05487 1.19754 0.99362 1.01557 0.96859 1.20337 0.94849 0.93116 0.94645 1.98403 1.96718 1.52895 1.50764 1.22371 0.88146 0.88395 0.96827 0.93664 0.93599 0.94576 0.89159 0.91556 0.91022 0.76763 0.80527 0.82906 0.95420 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.01 11.39 55.49 0.63 -26.38 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.22 -6.23 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.61 -15.53 3.70 -177.65 -0.66 -16.19 16 10 C 0.13 2.57 8.51 -2.96 -0.03 2.54 16 11 C -0.15 -2.72 3.93 -89.68 -0.35 -3.07 16 12 C 0.13 2.03 5.51 -4.04 -0.02 2.01 16 13 N -0.72 -10.05 5.55 -61.70 -0.34 -10.40 16 14 C 0.58 8.74 7.78 -12.96 -0.10 8.64 16 15 O -0.52 -9.25 15.09 5.17 0.08 -9.17 16 16 C -0.26 -3.24 6.45 -36.81 -0.24 -3.48 16 17 S 0.25 2.21 22.15 -107.50 -2.38 -0.17 16 18 C -0.23 -1.67 10.92 29.17 0.32 -1.35 16 19 C -0.14 -1.26 10.06 -41.38 -0.42 -1.68 16 20 C 0.01 0.15 6.39 -40.34 -0.26 -0.10 16 21 Cl -0.02 -0.21 27.24 -51.86 -1.41 -1.63 16 22 C 0.17 3.81 7.08 -2.83 -0.02 3.79 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 29 H 0.40 4.89 7.58 -40.82 -0.31 4.58 16 30 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -32.79 314.15 -9.33 -42.12 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.58 Total: -0.47 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.37 Total: 0.58 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.37 Total: -52.97 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.38 Total: -0.17 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.41 Total: -1.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.79 -9.33 -42.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031690948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.357 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds