Wall clock time and date at job start Tue Mar 31 2020 07:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47198 * 240.00322 * 3 2 1 5 5 H 1.48508 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47314 * 120.00306 * 3 2 1 7 7 C 1.38816 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99978 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99826 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49547 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11719 * 155.35572 * 10 9 7 12 12 C 1.53004 * 113.74114 * 137.95279 * 11 10 9 13 13 N 1.46499 * 109.47198 * 176.92319 * 12 11 10 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 11 15 15 O 1.21633 * 120.00238 * 359.72097 * 14 13 12 16 16 C 1.47160 * 119.99509 * 179.72415 * 14 13 12 17 17 C 1.36041 * 123.46794 * 0.02562 * 16 14 13 18 18 S 1.70443 * 110.82846 * 180.02562 * 17 16 14 19 19 C 1.75496 * 92.46089 * 0.02562 * 18 17 16 20 20 C 1.32851 * 110.57865 * 359.71123 * 19 18 17 21 21 Cl 1.73600 * 123.46940 * 180.28036 * 20 19 18 22 22 C 1.47820 * 134.45587 * 359.86757 * 9 7 2 23 23 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 24 24 H 1.09000 * 113.76774 * 41.05169 * 10 9 7 25 25 H 1.09000 * 113.76891 * 269.65946 * 10 9 7 26 26 H 1.09000 * 113.74470 * 269.15295 * 11 10 9 27 27 H 1.09009 * 109.46730 * 56.92106 * 12 11 10 28 28 H 1.08998 * 109.46846 * 296.92650 * 12 11 10 29 29 H 0.97001 * 119.99790 * 359.97438 * 13 12 11 30 30 H 1.08003 * 124.58807 * 0.02562 * 17 16 14 31 31 H 1.08001 * 124.71357 * 180.02562 * 19 18 17 32 32 H 1.08990 * 113.76877 * 90.38042 * 22 9 7 33 33 H 1.09001 * 113.83155 * 318.91572 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3471 -4.0829 0.6399 12 6 -0.3635 -5.3136 0.0730 13 7 -1.6200 -5.5278 0.7951 14 6 -2.4163 -6.5651 0.4688 15 8 -2.0941 -7.3204 -0.4286 16 6 -3.6755 -6.7838 1.1982 17 6 -4.1042 -5.9839 2.2117 18 16 -5.5971 -6.5310 2.8256 19 6 -5.6559 -7.8728 1.6961 20 6 -4.5860 -7.8675 0.9086 21 17 -4.3081 -9.0445 -0.3369 22 6 -0.1057 -2.7571 0.0024 23 1 -0.4850 0.8400 0.0004 24 1 2.5625 -4.0324 0.6546 25 1 1.8319 -4.2351 -0.9981 26 1 0.3596 -4.0639 1.7297 27 1 0.2764 -6.1884 0.1895 28 1 -0.5745 -5.1562 -0.9847 29 1 -1.8767 -4.9257 1.5109 30 1 -3.5706 -5.1191 2.5777 31 1 -6.4538 -8.5989 1.6446 32 1 -0.5318 -2.8718 -0.9942 33 1 -0.7182 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031751577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:25 Heat of formation + Delta-G solvation = 47.645888 kcal Electronic energy + Delta-G solvation = -18983.191986 eV Core-core repulsion = 15777.559939 eV Total energy + Delta-G solvation = -3205.632047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88947 -38.15698 -37.31700 -36.02410 -34.40963 -32.21352 -30.42426 -28.61888 -26.13280 -24.91501 -24.72834 -22.23920 -21.27379 -19.73773 -18.98096 -18.29412 -17.19197 -16.71623 -15.67598 -15.34506 -15.13909 -14.83798 -14.13701 -13.76220 -13.73021 -13.58949 -13.16588 -13.16287 -12.79315 -12.33666 -11.79109 -11.62945 -11.41592 -11.33620 -11.00245 -10.91443 -10.73571 -10.59513 -10.02424 -9.77944 -9.67845 -9.44131 -9.30277 -8.87971 -8.81047 -8.62323 -6.89540 -5.78517 -3.10544 0.39661 0.94805 1.36830 1.56430 2.38871 3.24792 3.32812 3.38574 3.42764 3.43778 4.32374 4.44092 4.83585 4.95267 5.07285 5.15317 5.30010 5.34767 5.50069 5.56587 5.67348 5.81983 6.03641 6.23854 6.34767 6.54033 6.62810 6.73541 7.19533 7.33363 7.52393 7.61880 7.96332 8.31040 9.03104 9.69346 10.58406 11.38651 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.025149 B = 0.003022 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.110845 B = 9262.807498 C =10045.989691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.154 4.154 12 C 0.132 3.868 13 N -0.715 5.715 14 C 0.569 3.431 15 O -0.524 6.524 16 C -0.144 4.144 17 C -0.205 4.205 18 S 0.228 5.772 19 C -0.241 4.241 20 C -0.007 4.007 21 Cl -0.019 7.019 22 C 0.168 3.832 23 H 0.254 0.746 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.399 0.601 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.028 0.972 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 -15.765 7.211 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.174 4.174 12 C 0.008 3.992 13 N -0.366 5.366 14 C 0.353 3.647 15 O -0.401 6.401 16 C -0.162 4.162 17 C -0.343 4.343 18 S 0.492 5.508 19 C -0.377 4.377 20 C -0.046 4.046 21 Cl 0.010 6.990 22 C 0.043 3.957 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.234 0.766 30 H 0.198 0.802 31 H 0.195 0.805 32 H 0.046 0.954 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.769 -15.537 7.571 22.097 hybrid contribution 1.328 0.741 -1.028 1.836 sum -12.440 -14.796 6.543 20.408 Atomic orbital electron populations 1.69800 1.05014 1.25428 1.56732 1.24775 0.95682 0.97510 1.02481 0.86199 0.78486 0.83115 0.77945 1.21181 1.21548 1.21090 1.18993 0.90284 0.82038 1.43815 0.90298 1.45973 1.02436 0.99291 1.86192 1.22483 0.93938 0.86443 0.96915 1.23808 0.98298 0.94741 1.00510 1.21482 0.83232 0.98076 0.96399 1.45895 1.22675 1.29354 1.38683 1.17427 0.82687 0.81414 0.83201 1.90839 1.73481 1.45486 1.30260 1.20072 0.98388 0.97456 1.00314 1.25721 1.02647 1.04815 1.01162 1.83139 1.15232 1.19174 1.33207 1.25427 1.03469 1.06048 1.02717 1.20670 0.94929 0.93966 0.94991 1.98401 1.96099 1.54336 1.50143 1.22354 0.88111 0.88411 0.96811 0.93628 0.93644 0.94586 0.89255 0.91733 0.91171 0.76645 0.80172 0.80458 0.95442 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 11.39 55.49 0.63 -26.41 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.57 3.70 -177.71 -0.66 -16.23 16 10 C 0.13 2.57 8.51 -2.97 -0.03 2.55 16 11 C -0.15 -2.69 3.93 -89.70 -0.35 -3.04 16 12 C 0.13 2.03 5.51 -4.04 -0.02 2.01 16 13 N -0.72 -9.80 5.52 -61.46 -0.34 -10.14 16 14 C 0.57 8.47 7.79 -12.64 -0.10 8.37 16 15 O -0.52 -9.44 15.05 5.25 0.08 -9.36 16 16 C -0.14 -1.75 5.98 -104.61 -0.63 -2.38 16 17 C -0.21 -1.85 10.38 29.94 0.31 -1.54 16 18 S 0.23 1.58 23.02 -107.50 -2.47 -0.90 16 19 C -0.24 -2.04 11.00 28.88 0.32 -1.72 16 20 C -0.01 -0.08 6.49 -38.98 -0.25 -0.33 16 21 Cl -0.02 -0.24 27.24 -51.86 -1.41 -1.65 16 22 C 0.17 3.82 7.08 -2.84 -0.02 3.80 16 23 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 29 H 0.40 4.58 6.97 -40.82 -0.28 4.29 16 30 H 0.18 1.25 7.01 -52.48 -0.37 0.88 16 31 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 33 H 0.07 1.77 7.17 -51.93 -0.37 1.40 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -33.20 313.35 -9.00 -42.21 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.50 Total: -0.19 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.03 Total: 0.96 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.37 Total: -52.78 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.90 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.41 Total: -1.65 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.20 -9.00 -42.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031751577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.853 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds