Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47223 * 355.35613 * 3 2 1 5 5 H 1.48498 * 109.46987 * 115.35288 * 3 2 1 6 6 H 1.48499 * 109.47127 * 235.35460 * 3 2 1 7 7 C 1.38812 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99749 * 352.27831 * 7 2 1 9 9 N 1.36934 * 119.99756 * 172.27789 * 7 2 1 10 10 C 1.47056 * 136.06095 * 6.42077 * 9 7 2 11 11 C 1.53755 * 87.89140 * 152.95995 * 10 9 7 12 12 C 1.52999 * 114.57104 * 272.66319 * 11 10 9 13 13 N 1.46503 * 109.47189 * 268.66729 * 12 11 10 14 14 C 1.34772 * 120.00106 * 180.02562 * 13 12 11 15 15 O 1.21643 * 120.00192 * 0.02562 * 14 13 12 16 16 C 1.47180 * 120.00059 * 180.02562 * 14 13 12 17 17 C 1.35976 * 123.45885 * 0.02562 * 16 14 13 18 18 S 1.70439 * 110.84676 * 179.97438 * 17 16 14 19 19 C 1.75506 * 92.45774 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 124.71805 * 179.97438 * 19 18 17 21 21 C 1.32889 * 110.55793 * 359.73904 * 19 18 17 22 22 C 1.47064 * 136.05365 * 186.78172 * 9 7 2 23 23 H 0.97000 * 119.99965 * 184.85770 * 1 2 3 24 24 H 1.09008 * 113.46970 * 267.69162 * 10 9 7 25 25 H 1.09002 * 113.46729 * 38.12904 * 10 9 7 26 26 H 1.09000 * 114.08918 * 139.78137 * 11 10 9 27 27 H 1.08995 * 109.47349 * 28.67175 * 12 11 10 28 28 H 1.09005 * 109.47118 * 148.67423 * 12 11 10 29 29 H 0.97004 * 119.99869 * 0.02562 * 13 12 11 30 30 H 1.07999 * 124.57113 * 359.97438 * 17 16 14 31 31 H 1.08005 * 123.47492 * 180.23059 * 21 19 18 32 32 H 1.09007 * 113.47044 * 321.87366 * 22 9 7 33 33 H 1.09010 * 113.46752 * 92.30944 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2891 2.7442 -0.1134 5 1 3.0168 1.7467 1.2652 6 1 3.1870 1.6485 -1.1518 7 6 2.0103 -1.2021 0.0005 8 1 1.4776 -2.1331 0.1266 9 7 3.3703 -1.2075 -0.1588 10 6 4.4313 -0.1922 -0.2375 11 6 5.4058 -1.2505 0.3051 12 6 5.4732 -1.3301 1.8316 13 7 6.5312 -0.4425 2.3206 14 6 6.7747 -0.3490 3.6428 15 8 6.1164 -1.0019 4.4302 16 6 7.8373 0.5431 4.1342 17 6 8.6143 1.3040 3.3180 18 16 9.7372 2.2121 4.2231 19 6 9.1550 1.5575 5.7439 20 17 9.7888 1.9720 7.3060 21 6 8.1583 0.7041 5.5335 22 6 4.4120 -2.2309 -0.3329 23 1 -0.4850 -0.8370 0.0711 24 1 4.6560 0.1227 -1.2566 25 1 4.2792 0.6480 0.4400 26 1 6.3871 -1.2366 -0.1693 27 1 4.5167 -1.0224 2.2540 28 1 5.6907 -2.3549 2.1327 29 1 7.0565 0.0779 1.6927 30 1 8.5310 1.3294 2.2415 31 1 7.6433 0.1824 6.3267 32 1 4.2435 -3.1278 0.2633 33 1 4.6316 -2.4536 -1.3772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032028245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = 54.455464 kcal Electronic energy + Delta-G solvation = -19104.762693 eV Core-core repulsion = 15899.425931 eV Total energy + Delta-G solvation = -3205.336762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.04372 -38.74358 -37.56509 -36.56773 -34.55007 -32.41663 -30.35066 -28.76791 -26.34848 -25.41431 -24.81371 -22.08216 -21.49308 -19.83279 -19.12641 -18.42885 -17.46004 -17.20357 -16.02014 -15.49253 -15.26914 -14.95937 -14.57243 -14.02770 -13.96137 -13.79150 -13.42384 -13.16739 -13.00271 -12.74411 -11.96594 -11.91245 -11.71394 -11.68251 -11.15165 -11.13502 -10.82155 -10.43687 -10.31481 -9.94979 -9.28040 -9.25507 -9.19224 -9.00782 -8.85954 -8.76871 -7.15563 -6.31915 -3.22602 0.27416 0.64007 1.34149 1.56704 1.78359 3.17023 3.26625 3.37284 3.42461 3.63085 4.42040 4.58469 4.70193 4.75165 4.88194 4.92840 5.09853 5.26679 5.41332 5.47074 5.70422 5.74745 5.85401 6.09124 6.18817 6.21419 6.33184 6.34488 6.48585 6.79793 7.10254 7.49713 8.20143 8.24507 8.98020 9.50390 10.35733 11.20981 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.003264 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.785884 B = 8575.531281 C = 8805.036785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.025 4.025 3 Si 1.071 2.929 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.305 4.305 8 H 0.083 0.917 9 N -0.627 5.627 10 C 0.102 3.898 11 C -0.149 4.149 12 C 0.146 3.854 13 N -0.718 5.718 14 C 0.573 3.427 15 O -0.531 6.531 16 C -0.139 4.139 17 C -0.209 4.209 18 S 0.235 5.765 19 C -0.174 4.174 20 Cl -0.011 7.011 21 C -0.067 4.067 22 C 0.132 3.868 23 H 0.261 0.739 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.397 0.603 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.048 0.952 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.181 4.462 7.759 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.224 4.224 3 Si 0.904 3.096 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.431 4.431 8 H 0.101 0.899 9 N -0.356 5.356 10 C -0.024 4.024 11 C -0.168 4.168 12 C 0.024 3.976 13 N -0.369 5.369 14 C 0.358 3.642 15 O -0.409 6.409 16 C -0.157 4.157 17 C -0.348 4.348 18 S 0.499 5.501 19 C -0.317 4.317 20 Cl 0.017 6.983 21 C -0.097 4.097 22 C 0.005 3.995 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.066 0.934 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 25.383 6.679 8.057 27.456 hybrid contribution -0.713 -2.426 0.048 2.529 sum 24.671 4.253 8.105 26.314 Atomic orbital electron populations 1.70915 1.05353 1.29470 1.51954 1.25718 0.96464 1.00955 0.99263 0.83679 0.73811 0.76052 0.76010 1.22268 1.22212 1.21469 1.20131 0.78748 0.95836 1.48409 0.89919 1.46020 1.02336 1.01770 1.85497 1.22840 0.87732 0.93680 0.98130 1.23214 0.98017 1.01313 0.94297 1.21106 0.90719 0.93359 0.92444 1.45884 1.37910 1.46495 1.06619 1.17435 0.82638 0.81666 0.82496 1.90831 1.49519 1.45201 1.55300 1.20119 1.00558 1.02426 0.92568 1.25819 1.01507 1.02159 1.05298 1.83144 1.33172 1.41497 0.92263 1.25082 1.05362 1.08418 0.92847 1.98380 1.85459 1.92466 1.21962 1.21185 0.95374 0.97036 0.96145 1.22284 0.86702 0.93301 0.97194 0.92889 0.93587 0.93124 0.90243 0.89700 0.91192 0.76911 0.80320 0.81855 0.93361 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.86 13.70 55.49 0.76 -29.10 16 2 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 3 Si 1.07 26.91 25.13 -169.99 -4.27 22.64 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 5 H -0.29 -7.07 6.65 56.52 0.38 -6.69 16 6 H -0.29 -6.60 6.13 56.52 0.35 -6.25 16 7 C -0.31 -8.82 11.08 -15.06 -0.17 -8.98 16 8 H 0.08 2.52 8.05 -52.49 -0.42 2.10 16 9 N -0.63 -15.10 3.54 -184.63 -0.65 -15.75 16 10 C 0.10 2.03 5.23 -8.39 -0.04 1.98 16 11 C -0.15 -2.31 4.17 -89.97 -0.37 -2.69 16 12 C 0.15 2.36 5.51 -4.04 -0.02 2.33 16 13 N -0.72 -9.53 5.52 -61.46 -0.34 -9.87 16 14 C 0.57 8.47 7.79 -12.63 -0.10 8.37 16 15 O -0.53 -10.04 16.80 5.24 0.09 -9.95 16 16 C -0.14 -1.59 5.98 -104.63 -0.63 -2.22 16 17 C -0.21 -1.72 10.38 29.92 0.31 -1.41 16 18 S 0.24 1.69 23.02 -107.50 -2.47 -0.78 16 19 C -0.17 -1.63 7.01 28.89 0.20 -1.43 16 20 Cl -0.01 -0.10 29.27 -51.86 -1.52 -1.61 16 21 C -0.07 -0.74 10.04 -38.98 -0.39 -1.13 16 22 C 0.13 2.46 8.25 -8.52 -0.07 2.39 16 23 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 24 H 0.05 0.89 7.73 -51.92 -0.40 0.49 16 25 H 0.05 1.06 4.63 -51.93 -0.24 0.82 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.73 7.93 -51.93 -0.41 1.31 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.40 3.87 6.97 -40.82 -0.28 3.59 16 30 H 0.18 0.97 7.01 -52.49 -0.37 0.60 16 31 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.05 0.88 8.12 -51.92 -0.42 0.46 16 33 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -34.73 309.46 -8.60 -43.33 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.47 Total: 0.06 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.38 Total: -3.63 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.23 Total: -54.71 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.27 Total: 22.64 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.78 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.73 -8.60 -43.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032028245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.783 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds