Wall clock time and date at job start Tue Mar 31 2020 07:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47183 * 274.98607 * 3 2 1 5 5 H 1.48498 * 109.47179 * 34.98544 * 3 2 1 6 6 H 1.48500 * 109.47274 * 154.98499 * 3 2 1 7 7 C 1.38811 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99522 * 185.06937 * 7 2 1 9 9 N 1.36934 * 120.00162 * 5.06639 * 7 2 1 10 10 C 1.47582 * 134.49010 * 173.48273 * 9 7 2 11 11 C 1.53942 * 86.11627 * 155.35787 * 10 9 7 12 12 C 1.53006 * 113.74582 * 137.94935 * 11 10 9 13 13 N 1.46498 * 109.47262 * 176.92738 * 12 11 10 14 14 C 1.34782 * 119.99741 * 180.02562 * 13 12 11 15 15 O 1.21716 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.46467 * 119.99612 * 179.97438 * 14 13 12 17 17 C 1.36689 * 125.44317 * 179.97438 * 16 14 13 18 18 C 1.37400 * 113.31671 * 180.02562 * 17 16 14 19 19 C 1.34016 * 115.06974 * 0.02562 * 18 17 16 20 20 Cl 1.73608 * 124.53161 * 179.97438 * 19 18 17 21 21 S 1.70611 * 110.93743 * 359.97438 * 19 18 17 22 22 C 1.47810 * 134.45866 * 353.34892 * 9 7 2 23 23 H 0.96996 * 120.00279 * 0.02562 * 1 2 3 24 24 H 1.08994 * 113.77620 * 41.05365 * 10 9 7 25 25 H 1.09006 * 113.76886 * 269.65495 * 10 9 7 26 26 H 1.08997 * 113.74519 * 269.15241 * 11 10 9 27 27 H 1.08998 * 109.46736 * 56.91887 * 12 11 10 28 28 H 1.08999 * 109.46638 * 296.92514 * 12 11 10 29 29 H 0.96997 * 119.99782 * 359.97438 * 13 12 11 30 30 H 1.08001 * 123.34575 * 0.02664 * 17 16 14 31 31 H 1.08001 * 122.46977 * 179.73297 * 18 17 16 32 32 H 1.08994 * 113.77267 * 90.37550 * 22 9 7 33 33 H 1.09005 * 113.83337 * 318.91364 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0832 9 7 1.3296 -2.3858 -0.1037 10 6 1.7288 -3.7985 -0.2550 11 6 0.3711 -4.1417 0.3844 12 6 -0.3479 -5.3132 -0.2877 13 7 -1.5875 -5.6055 0.4363 14 6 -2.3900 -6.6059 0.0218 15 8 -2.0850 -7.2661 -0.9542 16 6 -3.6290 -6.8986 0.7460 17 6 -4.5216 -7.8826 0.4243 18 6 -5.6007 -7.9366 1.2731 19 6 -5.5947 -7.0276 2.2578 20 17 -6.8337 -6.8756 3.4644 21 16 -4.2067 -6.0397 2.1672 22 6 -0.1001 -2.7610 -0.1072 23 1 -0.4850 0.8400 -0.0004 24 1 2.5860 -4.0808 0.3561 25 1 1.8197 -4.1207 -1.2924 26 1 0.4075 -4.2320 1.4700 27 1 0.2971 -6.1917 -0.2735 28 1 -0.5828 -5.0515 -1.3194 29 1 -1.8303 -5.0796 1.2143 30 1 -4.3916 -8.5512 -0.4138 31 1 -6.3977 -8.6555 1.1527 32 1 -0.5475 -2.7777 -1.1010 33 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032169907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:42 Heat of formation + Delta-G solvation = 45.395270 kcal Electronic energy + Delta-G solvation = -18728.889247 eV Core-core repulsion = 15523.159606 eV Total energy + Delta-G solvation = -3205.729641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -39.84505 -38.32414 -37.80967 -36.81820 -34.51544 -32.23788 -30.30938 -28.65594 -26.21024 -24.90827 -24.71694 -22.29224 -21.32702 -19.94939 -19.34912 -18.40389 -16.79862 -16.51859 -16.08325 -15.52974 -15.38936 -14.86234 -14.30451 -14.06758 -13.83504 -13.61452 -13.38119 -13.03793 -12.88934 -12.40145 -11.82452 -11.69672 -11.45709 -11.36506 -11.16365 -11.01996 -10.76431 -10.61271 -10.20914 -9.86651 -9.81048 -9.47409 -9.15141 -9.00550 -8.86715 -8.81204 -6.89527 -5.80916 -3.12123 0.05152 0.67086 1.36527 1.78030 1.98060 3.07790 3.13047 3.37821 3.43157 3.44953 4.43349 4.65175 4.78367 4.98237 5.11776 5.25054 5.30535 5.45475 5.58702 5.69148 5.77600 5.85196 5.97422 6.18531 6.29505 6.45806 6.59544 6.68530 7.17886 7.29779 7.44370 7.52560 7.94884 8.10264 9.01877 9.68121 10.57487 11.36914 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.002987 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.387231 B = 9371.640136 C =10393.639711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.612 5.612 10 C 0.129 3.871 11 C -0.156 4.156 12 C 0.130 3.870 13 N -0.715 5.715 14 C 0.587 3.413 15 O -0.530 6.530 16 C -0.253 4.253 17 C -0.054 4.054 18 C -0.134 4.134 19 C -0.172 4.172 20 Cl -0.010 7.010 21 S 0.261 5.739 22 C 0.171 3.829 23 H 0.254 0.746 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.399 0.601 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.030 0.970 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 -16.137 6.068 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.176 4.176 12 C 0.007 3.993 13 N -0.366 5.366 14 C 0.372 3.628 15 O -0.408 6.408 16 C -0.375 4.375 17 C -0.087 4.087 18 C -0.167 4.167 19 C -0.318 4.318 20 Cl 0.019 6.981 21 S 0.527 5.473 22 C 0.045 3.955 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.048 0.952 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.608 -14.984 6.382 20.000 hybrid contribution -0.545 0.017 -0.436 0.698 sum -12.154 -14.967 5.946 20.176 Atomic orbital electron populations 1.69822 1.05060 1.25411 1.56340 1.24818 0.95685 0.97541 1.02302 0.86133 0.78754 0.83564 0.77540 1.21614 1.21688 1.20546 1.19033 0.90800 0.82068 1.43327 0.90184 1.45955 1.02389 1.00697 1.84820 1.22485 0.93905 0.86375 0.96987 1.23860 0.98450 0.95084 1.00210 1.21547 0.83428 0.98139 0.96216 1.45971 1.23814 1.34037 1.32730 1.16845 0.81750 0.80637 0.83615 1.90840 1.73418 1.50117 1.26460 1.24880 1.02856 1.05728 1.03991 1.20625 0.91297 0.97059 0.99701 1.20066 1.01040 1.00833 0.94803 1.25042 1.00246 1.06134 1.00413 1.98389 1.50077 1.97152 1.52489 1.83396 1.10549 1.30392 1.22915 1.22306 0.88080 0.87228 0.97850 0.93618 0.93610 0.94567 0.89142 0.91468 0.90914 0.76667 0.82061 0.82850 0.95216 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 11.51 55.49 0.64 -26.27 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -6.25 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.61 -15.42 3.70 -177.71 -0.66 -16.08 16 10 C 0.13 2.53 8.51 -2.97 -0.03 2.51 16 11 C -0.16 -2.69 3.93 -89.69 -0.35 -3.04 16 12 C 0.13 1.95 5.51 -4.04 -0.02 1.93 16 13 N -0.72 -9.70 5.55 -61.68 -0.34 -10.04 16 14 C 0.59 8.34 7.78 -12.94 -0.10 8.24 16 15 O -0.53 -9.17 16.84 5.17 0.09 -9.08 16 16 C -0.25 -2.91 6.45 -36.83 -0.24 -3.15 16 17 C -0.05 -0.54 10.01 -40.45 -0.40 -0.95 16 18 C -0.13 -1.16 10.08 -41.37 -0.42 -1.58 16 19 C -0.17 -1.58 6.82 29.25 0.20 -1.39 16 20 Cl -0.01 -0.08 29.27 -51.86 -1.52 -1.60 16 21 S 0.26 2.49 22.15 -107.50 -2.38 0.11 16 22 C 0.17 3.83 6.99 -2.84 -0.02 3.81 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.18 7.88 -51.93 -0.41 0.78 16 29 H 0.40 4.76 7.58 -40.82 -0.31 4.46 16 30 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 33 H 0.07 1.68 7.37 -51.93 -0.38 1.29 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -31.98 317.68 -9.64 -41.62 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.59 Total: -0.04 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.64 Total: -0.32 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.36 Total: -52.39 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.38 Total: 0.11 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.98 -9.64 -41.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032169907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.010 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds