Wall clock time and date at job start Tue Mar 31 2020 07:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47183 * 274.98607 * 3 2 1 5 5 H 1.48498 * 109.47179 * 34.98544 * 3 2 1 6 6 H 1.48500 * 109.47274 * 154.98499 * 3 2 1 7 7 C 1.38811 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99522 * 185.06937 * 7 2 1 9 9 N 1.36934 * 120.00162 * 5.06639 * 7 2 1 10 10 C 1.47582 * 134.49010 * 173.48273 * 9 7 2 11 11 C 1.53942 * 86.11627 * 155.35787 * 10 9 7 12 12 C 1.53006 * 113.74582 * 137.94935 * 11 10 9 13 13 N 1.46498 * 109.47262 * 176.92738 * 12 11 10 14 14 C 1.34782 * 119.99741 * 180.02562 * 13 12 11 15 15 O 1.21716 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.46467 * 119.99612 * 179.97438 * 14 13 12 17 17 C 1.36689 * 125.44317 * 179.97438 * 16 14 13 18 18 C 1.37400 * 113.31671 * 180.02562 * 17 16 14 19 19 C 1.34016 * 115.06974 * 0.02562 * 18 17 16 20 20 Cl 1.73608 * 124.53161 * 179.97438 * 19 18 17 21 21 S 1.70611 * 110.93743 * 359.97438 * 19 18 17 22 22 C 1.47810 * 134.45866 * 353.34892 * 9 7 2 23 23 H 0.96996 * 120.00279 * 0.02562 * 1 2 3 24 24 H 1.08994 * 113.77620 * 41.05365 * 10 9 7 25 25 H 1.09006 * 113.76886 * 269.65495 * 10 9 7 26 26 H 1.08997 * 113.74519 * 269.15241 * 11 10 9 27 27 H 1.08998 * 109.46736 * 56.91887 * 12 11 10 28 28 H 1.08999 * 109.46638 * 296.92514 * 12 11 10 29 29 H 0.96997 * 119.99782 * 359.97438 * 13 12 11 30 30 H 1.08001 * 123.34575 * 0.02664 * 17 16 14 31 31 H 1.08001 * 122.46977 * 179.73297 * 18 17 16 32 32 H 1.08994 * 113.77267 * 90.37550 * 22 9 7 33 33 H 1.09005 * 113.83337 * 318.91364 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0832 9 7 1.3296 -2.3858 -0.1037 10 6 1.7288 -3.7985 -0.2550 11 6 0.3711 -4.1417 0.3844 12 6 -0.3479 -5.3132 -0.2877 13 7 -1.5875 -5.6055 0.4363 14 6 -2.3900 -6.6059 0.0218 15 8 -2.0850 -7.2661 -0.9542 16 6 -3.6290 -6.8986 0.7460 17 6 -4.5216 -7.8826 0.4243 18 6 -5.6007 -7.9366 1.2731 19 6 -5.5947 -7.0276 2.2578 20 17 -6.8337 -6.8756 3.4644 21 16 -4.2067 -6.0397 2.1672 22 6 -0.1001 -2.7610 -0.1072 23 1 -0.4850 0.8400 -0.0004 24 1 2.5860 -4.0808 0.3561 25 1 1.8197 -4.1207 -1.2924 26 1 0.4075 -4.2320 1.4700 27 1 0.2971 -6.1917 -0.2735 28 1 -0.5828 -5.0515 -1.3194 29 1 -1.8303 -5.0796 1.2143 30 1 -4.3916 -8.5512 -0.4138 31 1 -6.3977 -8.6555 1.1527 32 1 -0.5475 -2.7777 -1.1010 33 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032169907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:41 Heat of formation + Delta-G solvation = 24.939309 kcal Electronic energy + Delta-G solvation = -18729.776284 eV Core-core repulsion = 15523.159606 eV Total energy + Delta-G solvation = -3206.616679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98405 -39.72170 -38.80396 -37.56653 -35.82608 -34.19712 -31.41945 -30.11433 -27.73683 -26.55238 -25.79882 -23.87462 -22.42679 -21.17150 -20.40869 -19.55309 -18.71616 -17.51358 -17.11675 -16.97812 -16.57237 -16.35486 -15.74074 -15.38245 -15.00209 -14.72743 -14.52583 -14.34492 -14.02924 -13.66193 -13.31457 -13.09905 -12.88624 -12.59827 -12.54803 -12.44102 -12.22807 -11.87113 -11.83289 -11.61139 -11.35170 -11.13937 -10.86256 -10.24891 -9.77047 -9.73753 -8.89987 -7.91804 -5.23692 -0.76290 -0.09038 0.59856 1.04798 1.18992 1.46066 1.47911 1.56561 2.01863 2.08258 2.47945 3.28882 3.39874 3.65658 3.77865 4.04357 4.06315 4.27633 4.34934 4.58666 4.75023 4.77856 4.83342 4.88161 4.95362 5.09152 5.13526 5.26020 5.29336 5.54640 5.64115 5.94160 6.35979 6.92738 7.01212 7.61192 8.57429 9.25890 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.002987 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.387231 B = 9371.640136 C =10393.639711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.236 4.236 8 H 0.084 0.916 9 N -0.645 5.645 10 C 0.127 3.873 11 C -0.118 4.118 12 C 0.141 3.859 13 N -0.712 5.712 14 C 0.589 3.411 15 O -0.566 6.566 16 C -0.282 4.282 17 C -0.045 4.045 18 C -0.131 4.131 19 C -0.174 4.174 20 Cl 0.000 7.000 21 S 0.277 5.723 22 C 0.167 3.833 23 H 0.249 0.751 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.407 0.593 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.013 0.987 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -17.256 6.912 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.365 4.365 8 H 0.102 0.898 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.138 4.138 12 C 0.017 3.983 13 N -0.363 5.363 14 C 0.376 3.624 15 O -0.448 6.448 16 C -0.403 4.403 17 C -0.078 4.078 18 C -0.163 4.163 19 C -0.320 4.320 20 Cl 0.028 6.972 21 S 0.544 5.456 22 C 0.042 3.958 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.243 0.757 30 H 0.185 0.815 31 H 0.196 0.804 32 H 0.031 0.969 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.740 -16.122 7.251 21.221 hybrid contribution -0.554 0.303 -0.670 0.921 sum -12.294 -15.820 6.582 21.089 Atomic orbital electron populations 1.69998 1.06415 1.25635 1.57945 1.25635 0.96571 1.00814 1.02915 0.85100 0.78010 0.79336 0.77155 1.21760 1.22004 1.19074 1.19434 0.91335 0.83514 1.42185 0.89820 1.46375 1.03768 1.02032 1.85035 1.22692 0.95666 0.83325 0.98110 1.23455 0.96498 0.92928 1.00874 1.21304 0.84148 0.97567 0.95262 1.45877 1.23404 1.34160 1.32844 1.17117 0.82250 0.79912 0.83157 1.90813 1.74484 1.51364 1.28111 1.24658 1.02603 1.07525 1.05501 1.20833 0.91052 0.96268 0.99695 1.20257 1.01103 1.01007 0.93980 1.25207 1.00222 1.05939 1.00632 1.98398 1.49572 1.97098 1.52107 1.83322 1.10617 1.29995 1.21702 1.22227 0.86931 0.90169 0.96489 0.94253 0.91803 0.93441 0.87612 0.89822 0.92266 0.75706 0.81480 0.80393 0.96885 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 11.51 21.65 0.25 -56.69 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.18 10.70 84.03 0.90 -12.28 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.65 -32.51 3.70 -716.16 -2.65 -35.16 16 10 C 0.13 4.81 8.51 86.48 0.74 5.55 16 11 C -0.12 -3.93 3.93 -10.13 -0.04 -3.97 16 12 C 0.14 4.07 5.51 86.38 0.48 4.55 16 13 N -0.71 -18.69 5.55 -467.27 -2.59 -21.28 16 14 C 0.59 16.36 7.78 86.39 0.67 17.03 16 15 O -0.57 -19.41 16.84 -4.40 -0.07 -19.48 16 16 C -0.28 -6.18 6.45 24.05 0.16 -6.03 16 17 C -0.04 -0.83 10.01 21.71 0.22 -0.61 16 18 C -0.13 -1.96 10.08 21.11 0.21 -1.74 16 19 C -0.17 -2.84 6.82 66.86 0.46 -2.39 16 20 Cl 0.00 0.00 29.27 -2.72 -0.08 -0.08 16 21 S 0.28 4.89 22.15 -56.49 -1.25 3.64 16 22 C 0.17 7.63 6.99 86.44 0.60 8.23 16 23 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.05 1.72 8.10 -2.38 -0.02 1.70 16 26 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 1.91 7.88 -2.39 -0.02 1.89 16 29 H 0.41 9.33 7.58 -92.71 -0.70 8.63 16 30 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 32 H 0.01 0.64 7.92 -2.39 -0.02 0.62 16 33 H 0.04 2.09 7.37 -2.38 -0.02 2.07 16 Total: -1.00 -68.96 317.68 0.93 -68.03 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.44 Total: 8.48 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.85 Total: 5.05 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.99 Total: -113.14 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.07 Total: -19.48 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -1.25 Total: 3.64 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -68.96 0.93 -68.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032169907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.968 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds