Wall clock time and date at job start Tue Mar 31 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99731 * 2 1 4 4 H 1.48504 * 109.47025 * 274.97883 * 3 2 1 5 5 H 1.48498 * 109.46987 * 34.97846 * 3 2 1 6 6 H 1.48498 * 109.47033 * 154.98263 * 3 2 1 7 7 C 1.38809 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00033 * 186.72017 * 7 2 1 9 9 N 1.36935 * 120.00053 * 6.72631 * 7 2 1 10 10 C 1.47073 * 136.05754 * 356.10424 * 9 7 2 11 11 C 1.53491 * 87.98563 * 152.91393 * 10 9 7 12 12 C 1.47074 * 136.05965 * 176.15018 * 9 7 2 13 13 H 1.09003 * 113.46384 * 92.24603 * 12 9 7 14 14 C 1.52998 * 113.46761 * 321.86837 * 12 9 7 15 15 N 1.46501 * 109.47084 * 74.50039 * 14 12 9 16 16 C 1.34772 * 120.00067 * 179.97438 * 15 14 12 17 17 O 1.21710 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.46574 * 120.00074 * 180.02562 * 16 15 14 19 19 C 1.36676 * 125.44985 * 179.97438 * 18 16 15 20 20 C 1.37529 * 113.28512 * 180.02562 * 19 18 16 21 21 Cl 1.73598 * 122.45955 * 180.27055 * 20 19 18 22 22 C 1.33877 * 115.08092 * 359.97438 * 20 19 18 23 23 S 1.70615 * 110.95774 * 0.02562 * 22 20 19 24 24 H 0.97001 * 120.00564 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.46175 * 267.69469 * 10 9 7 26 26 H 1.08999 * 113.46237 * 38.12974 * 10 9 7 27 27 H 1.09003 * 114.20744 * 272.47696 * 11 10 9 28 28 H 1.08997 * 114.20813 * 139.65413 * 11 10 9 29 29 H 1.09002 * 109.47232 * 314.50420 * 14 12 9 30 30 H 1.08995 * 109.47164 * 194.49783 * 14 12 9 31 31 H 0.97005 * 120.00375 * 0.02562 * 15 14 12 32 32 H 1.08000 * 123.35909 * 0.06682 * 19 18 16 33 33 H 1.08000 * 124.52058 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5963 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0847 -1.2052 0.1100 9 7 1.3327 -2.3840 -0.1378 10 6 -0.0771 -2.7913 -0.2358 11 6 0.3890 -4.0183 -1.0315 12 6 1.6945 -3.8049 -0.2530 13 1 1.7201 -4.3252 0.7044 14 6 2.9508 -4.0477 -1.0918 15 7 4.1349 -3.6595 -0.3215 16 6 5.3626 -3.7872 -0.8626 17 8 5.4876 -4.2246 -1.9915 18 6 6.5473 -3.3993 -0.0916 19 6 7.8396 -3.4819 -0.5289 20 6 8.7567 -3.0506 0.4008 21 17 10.4650 -3.0460 0.0919 22 6 8.2349 -2.6286 1.5593 23 16 6.5334 -2.7536 1.5437 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5243 -3.0419 0.7261 26 1 -0.6883 -2.1023 -0.8188 27 1 0.4757 -3.8485 -2.1048 28 1 -0.1358 -4.9399 -0.7799 29 1 2.8995 -3.4526 -2.0037 30 1 3.0162 -5.1044 -1.3507 31 1 4.0354 -3.3112 0.5784 32 1 8.1133 -3.8487 -1.5071 33 1 8.8139 -2.2592 2.3928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038770470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:49 Heat of formation + Delta-G solvation = 48.170472 kcal Electronic energy + Delta-G solvation = -19372.249316 eV Core-core repulsion = 16166.640016 eV Total energy + Delta-G solvation = -3205.609300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67423 -38.41057 -37.83171 -36.14333 -34.18918 -32.27855 -30.28074 -28.13612 -27.69703 -25.02248 -23.52581 -22.31984 -21.06045 -19.69151 -19.28108 -18.57251 -16.77189 -16.46874 -15.71023 -15.47406 -15.38245 -14.76842 -14.14899 -13.85441 -13.72031 -13.37658 -13.31192 -13.00450 -12.90752 -12.00568 -11.60438 -11.52513 -11.48941 -11.21937 -11.06297 -11.02410 -10.80971 -10.61430 -10.12770 -9.87761 -9.86918 -9.34937 -9.16394 -8.81897 -8.74268 -8.61280 -6.96732 -5.83149 -3.15126 0.26184 1.05375 1.40565 1.99975 2.32253 3.24613 3.34456 3.37803 3.40827 3.42217 4.37959 4.61693 4.90270 4.99499 5.14776 5.32861 5.43187 5.51029 5.60931 5.75835 5.84465 5.86323 6.02583 6.26474 6.34287 6.53924 6.61990 6.74649 7.16407 7.34741 7.51772 7.68290 7.91581 8.32129 8.96570 9.64624 10.56971 11.34150 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.004390 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.907638 B = 6376.641963 C = 7482.503401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.122 3.878 15 N -0.706 5.706 16 C 0.585 3.415 17 O -0.534 6.534 18 C -0.248 4.248 19 C -0.060 4.060 20 C -0.059 4.059 21 Cl -0.052 7.052 22 C -0.240 4.240 23 S 0.265 5.735 24 H 0.254 0.746 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.400 0.600 32 H 0.163 0.837 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.226 -8.170 3.890 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.355 5.355 16 C 0.370 3.630 17 O -0.413 6.413 18 C -0.369 4.369 19 C -0.093 4.093 20 C -0.099 4.099 21 Cl -0.023 7.023 22 C -0.379 4.379 23 S 0.532 5.468 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.180 0.820 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.316 -7.755 4.158 15.137 hybrid contribution 1.868 0.936 -0.359 2.120 sum 14.184 -6.819 3.799 16.190 Atomic orbital electron populations 1.69833 1.04994 1.25356 1.55999 1.24759 0.95586 0.97394 1.02274 0.86215 0.78727 0.83811 0.77719 1.21494 1.21669 1.20512 1.18814 0.90387 0.81485 1.43765 0.90347 1.45723 1.02684 0.98909 1.85431 1.22053 0.88632 0.91146 0.95657 1.23643 0.96928 0.99217 1.00077 1.22443 0.91823 0.88286 0.95656 0.93370 1.21912 0.83222 0.99239 0.95864 1.45854 1.05606 1.64812 1.19265 1.16822 0.81943 0.78580 0.85643 1.90816 1.86124 1.46388 1.18022 1.24711 0.97984 1.13674 1.00520 1.20459 0.89498 0.98598 1.00721 1.19514 0.86850 1.08144 0.95431 1.98362 1.10597 1.97486 1.95879 1.25284 1.01257 1.08737 1.02612 1.83471 0.98551 1.55818 1.08965 0.93619 0.95700 0.90974 0.90112 0.92236 0.90616 0.91814 0.76486 0.81997 0.80398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 11.53 55.49 0.64 -25.67 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.58 29.56 -169.99 -5.02 16.56 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.22 -5.67 10.54 -15.06 -0.16 -5.82 16 8 H 0.08 1.96 7.49 -52.48 -0.39 1.56 16 9 N -0.60 -14.19 3.65 -176.97 -0.65 -14.84 16 10 C 0.15 3.34 7.42 -8.50 -0.06 3.28 16 11 C -0.16 -2.79 8.03 -26.22 -0.21 -3.00 16 12 C 0.13 2.33 4.10 -72.38 -0.30 2.03 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.13 5.52 -4.04 -0.02 2.11 16 15 N -0.71 -11.87 5.36 -61.65 -0.33 -12.20 16 16 C 0.59 10.01 7.78 -12.90 -0.10 9.91 16 17 O -0.53 -10.63 16.84 5.18 0.09 -10.54 16 18 C -0.25 -3.53 6.45 -36.79 -0.24 -3.76 16 19 C -0.06 -0.79 9.89 -40.40 -0.40 -1.19 16 20 C -0.06 -0.68 6.25 -41.37 -0.26 -0.94 16 21 Cl -0.05 -0.54 29.10 -51.86 -1.51 -2.05 16 22 C -0.24 -2.47 10.78 29.20 0.31 -2.16 16 23 S 0.27 3.02 22.15 -107.50 -2.38 0.64 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.80 7.11 -51.93 -0.37 1.43 16 27 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.40 6.41 7.43 -40.82 -0.30 6.11 16 32 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -30.56 317.06 -9.50 -40.05 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.58 Total: 2.99 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.53 Total: 0.28 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.34 Total: -52.71 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.38 Total: 0.64 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.56 -9.50 -40.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038770470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.224 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds