Wall clock time and date at job start Tue Mar 31 2020 07:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48506 * 109.47518 * 270.00149 * 3 2 1 5 5 H 1.48498 * 109.47422 * 30.00517 * 3 2 1 6 6 H 1.48500 * 109.47164 * 150.00158 * 3 2 1 7 7 C 1.38807 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.06113 * 0.02562 * 9 7 2 11 11 C 1.53492 * 87.98733 * 152.61725 * 10 9 7 12 12 C 1.47067 * 136.05300 * 179.63082 * 9 7 2 13 13 H 1.09000 * 113.47312 * 92.60160 * 12 9 7 14 14 C 1.53004 * 113.47167 * 322.16108 * 12 9 7 15 15 N 1.46494 * 109.47198 * 74.50356 * 14 12 9 16 16 C 1.34781 * 120.00039 * 180.02562 * 15 14 12 17 17 O 1.21629 * 119.99537 * 0.02562 * 16 15 14 18 18 C 1.47180 * 119.99754 * 180.02562 * 16 15 14 19 19 C 1.35964 * 123.46000 * 359.70787 * 18 16 15 20 20 S 1.70446 * 110.84833 * 179.85895 * 19 18 16 21 21 C 1.75507 * 92.45062 * 0.34373 * 20 19 18 22 22 Cl 1.73599 * 124.71423 * 179.80372 * 21 20 19 23 23 C 1.32880 * 110.56595 * 359.80369 * 21 20 19 24 24 H 0.97005 * 120.00072 * 359.97438 * 1 2 3 25 25 H 1.09001 * 113.46506 * 267.40214 * 10 9 7 26 26 H 1.08997 * 113.46560 * 37.83666 * 10 9 7 27 27 H 1.08996 * 114.20649 * 139.65482 * 11 10 9 28 28 H 1.08998 * 114.21061 * 272.28621 * 11 10 9 29 29 H 1.08997 * 109.46963 * 194.50936 * 14 12 9 30 30 H 1.09004 * 109.46475 * 314.50640 * 14 12 9 31 31 H 0.96997 * 120.00059 * 0.02562 * 15 14 12 32 32 H 1.08011 * 124.57861 * 359.95641 * 19 18 16 33 33 H 1.07999 * 123.47867 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0877 -2.7949 -0.0005 11 6 0.3409 -4.0889 -0.7061 12 6 1.6800 -3.8153 -0.0076 13 1 1.7466 -4.2510 0.9893 14 6 2.8974 -4.1366 -0.8769 15 7 4.1151 -3.6893 -0.1964 16 6 5.3173 -3.8690 -0.7788 17 8 5.3910 -4.4023 -1.8694 18 6 6.5407 -3.4200 -0.0948 19 6 6.5395 -2.8117 1.1211 20 16 8.1273 -2.4323 1.6112 21 6 8.8202 -3.0971 0.1420 22 17 10.5165 -3.1261 -0.2259 23 6 7.8658 -3.5750 -0.6494 24 1 -0.4850 0.8401 0.0004 25 1 -0.4922 -2.9585 0.9983 26 1 -0.7232 -2.1561 -0.6138 27 1 -0.1735 -4.9823 -0.3522 28 1 0.3771 -4.0145 -1.7929 29 1 2.9496 -5.2122 -1.0456 30 1 2.8062 -3.6227 -1.8339 31 1 4.0563 -3.2636 0.6732 32 1 5.6523 -2.5991 1.6993 33 1 8.0604 -4.0325 -1.6081 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038777495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:50 Heat of formation + Delta-G solvation = 47.648844 kcal Electronic energy + Delta-G solvation = -19376.033597 eV Core-core repulsion = 16170.401678 eV Total energy + Delta-G solvation = -3205.631919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.76070 -38.27109 -37.37824 -36.38078 -34.16783 -32.27539 -30.08361 -28.08427 -27.52791 -24.93644 -23.52398 -22.32288 -21.15869 -19.60514 -19.08159 -18.45479 -17.17838 -16.54455 -15.55161 -15.38555 -14.98577 -14.71181 -14.13482 -13.83249 -13.74650 -13.63230 -13.26358 -12.93430 -12.77829 -12.01774 -11.78811 -11.70117 -11.55991 -11.16023 -11.02809 -10.99217 -10.82805 -10.60731 -10.06502 -9.88687 -9.76389 -9.28190 -9.08677 -8.86820 -8.78450 -8.52176 -6.95594 -5.82376 -3.15356 0.49093 0.82562 1.54726 1.76166 1.94824 3.33730 3.38104 3.40969 3.44212 3.53899 4.37948 4.68482 4.99024 5.09825 5.16993 5.34336 5.45380 5.51552 5.62725 5.68917 5.86178 5.93742 6.05814 6.28212 6.36167 6.55347 6.65940 6.80968 7.17265 7.34334 7.52692 7.80173 7.91925 8.45448 8.96916 9.64604 10.57225 11.34649 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.004224 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.710535 B = 6627.342601 C = 7795.733770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.122 3.878 15 N -0.705 5.705 16 C 0.573 3.427 17 O -0.544 6.544 18 C -0.141 4.141 19 C -0.203 4.203 20 S 0.233 5.767 21 C -0.177 4.177 22 Cl -0.015 7.015 23 C -0.066 4.066 24 H 0.254 0.746 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.402 0.598 32 H 0.181 0.819 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -7.779 4.014 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.355 5.355 16 C 0.358 3.642 17 O -0.424 6.424 18 C -0.158 4.158 19 C -0.342 4.342 20 S 0.497 5.503 21 C -0.319 4.319 22 Cl 0.013 6.987 23 C -0.097 4.097 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.237 0.763 32 H 0.198 0.802 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 15.165 -7.090 4.488 17.331 hybrid contribution -0.133 0.577 -0.733 0.942 sum 15.031 -6.513 3.754 16.806 Atomic orbital electron populations 1.69826 1.04972 1.25331 1.56222 1.24766 0.95627 0.97408 1.02431 0.86201 0.78539 0.83731 0.77756 1.21488 1.21607 1.20727 1.18817 0.89940 0.81353 1.44218 0.90283 1.45650 1.02646 0.98512 1.85971 1.22032 0.88689 0.90251 0.96466 1.23658 0.96798 0.99083 1.00440 1.22426 0.92028 0.87824 0.95826 0.93401 1.21865 0.82706 0.98423 0.97265 1.45815 1.05778 1.60765 1.23094 1.17440 0.82664 0.79125 0.85009 1.90769 1.87011 1.44163 1.20416 1.20142 0.94382 1.05868 0.95456 1.25882 1.03961 1.03735 1.00579 1.83128 0.94618 1.56737 1.15860 1.25061 0.90361 1.13794 1.02729 1.98366 1.08949 1.97502 1.93834 1.21148 0.89020 0.98794 1.00719 0.93632 0.95709 0.90935 0.92314 0.90149 0.92003 0.90832 0.76350 0.80176 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 11.50 55.49 0.64 -25.80 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.22 -5.64 10.55 -15.06 -0.16 -5.79 16 8 H 0.08 1.97 7.51 -52.49 -0.39 1.58 16 9 N -0.60 -14.23 3.65 -177.01 -0.65 -14.88 16 10 C 0.15 3.37 7.40 -8.51 -0.06 3.31 16 11 C -0.16 -2.84 8.02 -26.22 -0.21 -3.05 16 12 C 0.13 2.35 4.10 -72.40 -0.30 2.06 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.15 5.52 -4.04 -0.02 2.13 16 15 N -0.70 -11.74 5.30 -61.46 -0.33 -12.06 16 16 C 0.57 9.81 7.79 -12.63 -0.10 9.71 16 17 O -0.54 -10.95 16.80 5.25 0.09 -10.86 16 18 C -0.14 -1.99 5.98 -104.63 -0.63 -2.62 16 19 C -0.20 -2.39 10.38 29.92 0.31 -2.08 16 20 S 0.23 2.31 23.02 -107.50 -2.48 -0.16 16 21 C -0.18 -2.01 7.01 28.88 0.20 -1.81 16 22 Cl -0.01 -0.15 29.27 -51.86 -1.52 -1.67 16 23 C -0.07 -0.85 10.04 -38.98 -0.39 -1.25 16 24 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.82 7.11 -51.93 -0.37 1.45 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.40 6.22 6.87 -40.82 -0.28 5.94 16 32 H 0.18 1.87 7.01 -52.48 -0.37 1.50 16 33 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -30.87 316.41 -9.45 -40.32 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.50 Total: 3.40 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.45 Total: 0.37 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.33 Total: -52.75 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.48 Total: -0.16 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.87 -9.45 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038777495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.973 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds