Wall clock time and date at job start Tue Mar 31 2020 07:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 299.99894 * 3 2 1 6 6 H 1.48504 * 109.47101 * 60.00180 * 3 2 1 7 7 C 1.38813 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.48927 * 0.02562 * 9 7 2 11 11 C 1.53951 * 86.11365 * 204.64271 * 10 9 7 12 12 C 1.47580 * 134.49393 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87051 * 269.67784 * 12 9 7 14 14 C 1.53002 * 113.76932 * 41.05881 * 12 9 7 15 15 N 1.46508 * 109.47058 * 281.49510 * 14 12 9 16 16 C 1.34770 * 119.99865 * 180.02562 * 15 14 12 17 17 O 1.21723 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.46467 * 120.00099 * 180.02562 * 16 15 14 19 19 C 1.36693 * 125.45060 * 179.97438 * 18 16 15 20 20 C 1.37399 * 113.31473 * 180.02562 * 19 18 16 21 21 C 1.34021 * 115.07690 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 124.53174 * 179.97438 * 21 20 19 23 23 S 1.70616 * 110.93237 * 0.26836 * 21 20 19 24 24 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.08999 * 113.76768 * 90.34040 * 10 9 7 26 26 H 1.08999 * 113.87052 * 318.95358 * 10 9 7 27 27 H 1.09009 * 113.73494 * 222.05394 * 11 10 9 28 28 H 1.08993 * 113.84005 * 90.75355 * 11 10 9 29 29 H 1.08992 * 109.47264 * 161.49701 * 14 12 9 30 30 H 1.09000 * 109.47262 * 41.49407 * 14 12 9 31 31 H 0.97003 * 119.99764 * 0.02562 * 15 14 12 32 32 H 1.07995 * 123.33993 * 359.97438 * 19 18 16 33 33 H 1.08001 * 122.46178 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3471 -4.0830 0.6399 12 6 1.7202 -3.8102 -0.0005 13 1 1.8327 -4.2367 -0.9973 14 6 2.9025 -4.1221 0.9192 15 7 4.1498 -3.7188 0.2650 16 6 5.3288 -3.8998 0.8923 17 8 5.3573 -4.3979 2.0026 18 6 6.5758 -3.4962 0.2385 19 6 7.8282 -3.6271 0.7703 20 6 8.8220 -3.1657 -0.0588 21 6 8.4001 -2.6723 -1.2313 22 17 9.4429 -2.0256 -2.4592 23 16 6.7003 -2.7572 -1.3521 24 1 -0.4850 0.8400 0.0004 25 1 -0.5271 -2.8731 -0.9981 26 1 -0.7184 -2.1400 0.6540 27 1 -0.1591 -4.9598 0.2358 28 1 0.3595 -4.0639 1.7296 29 1 2.9299 -5.1920 1.1255 30 1 2.7894 -3.5744 1.8548 31 1 4.1270 -3.3216 -0.6197 32 1 8.0176 -4.0503 1.7456 33 1 9.8663 -3.1976 0.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038989801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:53 Heat of formation + Delta-G solvation = 45.960503 kcal Electronic energy + Delta-G solvation = -19347.508264 eV Core-core repulsion = 16141.803133 eV Total energy + Delta-G solvation = -3205.705131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.64640 -38.22241 -37.70322 -36.68590 -34.19548 -32.22432 -30.11545 -28.03617 -27.61817 -24.93931 -23.40228 -22.49154 -21.12355 -19.74121 -19.24939 -18.56586 -16.74894 -16.38405 -15.85829 -15.41965 -15.27445 -14.76327 -14.17286 -13.91889 -13.76247 -13.50160 -13.33177 -13.03446 -12.77863 -12.01233 -11.66269 -11.55193 -11.46163 -11.17156 -11.05889 -11.00121 -10.77223 -10.56507 -10.13959 -9.85854 -9.76604 -9.46133 -8.98289 -8.85749 -8.83437 -8.65737 -6.93097 -5.79804 -3.12591 0.20776 0.81951 1.52553 1.91279 2.12754 3.24676 3.35070 3.37411 3.42105 3.43966 4.39791 4.82586 4.92803 5.09429 5.11674 5.35124 5.57054 5.58668 5.62527 5.83533 5.86993 5.98828 6.02281 6.26536 6.36127 6.56914 6.62052 6.76093 7.21457 7.37080 7.56270 7.67444 7.95005 8.31285 9.00828 9.67814 10.55423 11.36824 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.004742 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.929227 B = 5902.819509 C = 7177.538748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.124 3.876 13 H 0.051 0.949 14 C 0.123 3.877 15 N -0.707 5.707 16 C 0.585 3.415 17 O -0.534 6.534 18 C -0.249 4.249 19 C -0.057 4.057 20 C -0.134 4.134 21 C -0.175 4.175 22 Cl -0.012 7.012 23 S 0.264 5.736 24 H 0.253 0.747 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.161 0.839 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.985 -8.318 -3.542 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.016 3.984 13 H 0.068 0.932 14 C -0.001 4.001 15 N -0.357 5.357 16 C 0.370 3.630 17 O -0.414 6.414 18 C -0.371 4.371 19 C -0.090 4.090 20 C -0.167 4.167 21 C -0.321 4.321 22 Cl 0.016 6.984 23 S 0.530 5.470 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.234 0.766 32 H 0.179 0.821 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.038 -7.819 -3.995 15.719 hybrid contribution 1.779 0.975 0.322 2.054 sum 14.818 -6.844 -3.674 16.730 Atomic orbital electron populations 1.69823 1.04956 1.25186 1.56523 1.24746 0.95605 0.97386 1.02454 0.86166 0.78899 0.84115 0.77354 1.20387 1.21703 1.21674 1.18961 0.90105 0.81905 1.43838 0.90430 1.46086 1.02333 0.98493 1.85964 1.22199 0.87892 0.89591 0.96936 1.23770 0.95929 0.99041 1.00614 1.22529 0.92340 0.87838 0.95680 0.93219 1.21865 0.81706 0.99019 0.97510 1.45887 1.06100 1.62569 1.21095 1.16833 0.82096 0.78903 0.85144 1.90817 1.86799 1.44933 1.18820 1.24924 0.98711 1.12895 1.00527 1.20598 0.89307 0.98201 1.00902 1.20040 1.02089 1.02156 0.92447 1.25040 0.98623 1.10890 0.97545 1.98378 1.64419 1.84300 1.51258 1.83509 0.95893 1.54405 1.13162 0.93701 0.95523 0.90779 0.92733 0.90425 0.91706 0.90517 0.76557 0.82126 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 11.39 55.49 0.63 -25.93 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -5.82 10.51 -15.06 -0.16 -5.98 16 8 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 9 N -0.60 -14.34 3.57 -170.74 -0.61 -14.95 16 10 C 0.16 3.56 7.51 -2.97 -0.02 3.54 16 11 C -0.15 -2.73 7.86 -25.80 -0.20 -2.93 16 12 C 0.12 2.31 4.33 -66.86 -0.29 2.02 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.17 5.54 -4.04 -0.02 2.14 16 15 N -0.71 -11.91 5.52 -61.68 -0.34 -12.25 16 16 C 0.59 9.95 7.78 -12.95 -0.10 9.85 16 17 O -0.53 -10.50 16.84 5.17 0.09 -10.41 16 18 C -0.25 -3.52 6.45 -36.83 -0.24 -3.75 16 19 C -0.06 -0.70 10.01 -40.45 -0.40 -1.10 16 20 C -0.13 -1.42 10.08 -41.37 -0.42 -1.84 16 21 C -0.17 -1.97 6.82 29.25 0.20 -1.77 16 22 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16 23 S 0.26 3.24 22.15 -107.50 -2.38 0.86 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 27 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.40 6.43 7.58 -40.82 -0.31 6.12 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -30.71 317.77 -9.72 -40.43 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.61 Total: 2.38 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.75 Total: -0.07 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.32 Total: -53.14 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.38 Total: 0.86 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.71 -9.72 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038989801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.392 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds