Wall clock time and date at job start Tue Mar 31 2020 07:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48504 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47183 * 299.99894 * 3 2 1 6 6 H 1.48504 * 109.47101 * 60.00180 * 3 2 1 7 7 C 1.38813 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99983 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.48927 * 0.02562 * 9 7 2 11 11 C 1.53951 * 86.11365 * 204.64271 * 10 9 7 12 12 C 1.47580 * 134.49393 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87051 * 269.67784 * 12 9 7 14 14 C 1.53002 * 113.76932 * 41.05881 * 12 9 7 15 15 N 1.46508 * 109.47058 * 281.49510 * 14 12 9 16 16 C 1.34770 * 119.99865 * 180.02562 * 15 14 12 17 17 O 1.21723 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.46467 * 120.00099 * 180.02562 * 16 15 14 19 19 C 1.36693 * 125.45060 * 179.97438 * 18 16 15 20 20 C 1.37399 * 113.31473 * 180.02562 * 19 18 16 21 21 C 1.34021 * 115.07690 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 124.53174 * 179.97438 * 21 20 19 23 23 S 1.70616 * 110.93237 * 0.26836 * 21 20 19 24 24 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.08999 * 113.76768 * 90.34040 * 10 9 7 26 26 H 1.08999 * 113.87052 * 318.95358 * 10 9 7 27 27 H 1.09009 * 113.73494 * 222.05394 * 11 10 9 28 28 H 1.08993 * 113.84005 * 90.75355 * 11 10 9 29 29 H 1.08992 * 109.47264 * 161.49701 * 14 12 9 30 30 H 1.09000 * 109.47262 * 41.49407 * 14 12 9 31 31 H 0.97003 * 119.99764 * 0.02562 * 15 14 12 32 32 H 1.07995 * 123.33993 * 359.97438 * 19 18 16 33 33 H 1.08001 * 122.46178 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3471 -4.0830 0.6399 12 6 1.7202 -3.8102 -0.0005 13 1 1.8327 -4.2367 -0.9973 14 6 2.9025 -4.1221 0.9192 15 7 4.1498 -3.7188 0.2650 16 6 5.3288 -3.8998 0.8923 17 8 5.3573 -4.3979 2.0026 18 6 6.5758 -3.4962 0.2385 19 6 7.8282 -3.6271 0.7703 20 6 8.8220 -3.1657 -0.0588 21 6 8.4001 -2.6723 -1.2313 22 17 9.4429 -2.0256 -2.4592 23 16 6.7003 -2.7572 -1.3521 24 1 -0.4850 0.8400 0.0004 25 1 -0.5271 -2.8731 -0.9981 26 1 -0.7184 -2.1400 0.6540 27 1 -0.1591 -4.9598 0.2358 28 1 0.3595 -4.0639 1.7296 29 1 2.9299 -5.1920 1.1255 30 1 2.7894 -3.5744 1.8548 31 1 4.1270 -3.3216 -0.6197 32 1 8.0176 -4.0503 1.7456 33 1 9.8663 -3.1976 0.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038989801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:52 Heat of formation + Delta-G solvation = 26.646499 kcal Electronic energy + Delta-G solvation = -19348.345782 eV Core-core repulsion = 16141.803133 eV Total energy + Delta-G solvation = -3206.542649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96201 -39.67278 -38.81431 -37.59060 -35.62432 -34.20387 -31.24028 -29.87006 -29.02659 -25.99955 -25.28256 -23.91339 -22.39117 -21.07691 -20.55374 -19.83970 -18.47846 -17.50446 -17.13325 -17.08259 -16.47282 -16.28153 -15.73122 -15.39908 -15.03156 -14.76748 -14.59687 -14.37923 -13.72175 -13.59004 -13.29987 -12.97124 -12.72354 -12.61182 -12.55574 -12.48967 -12.26964 -11.88854 -11.85192 -11.53248 -11.44507 -11.06807 -10.83143 -10.23236 -9.79582 -9.77360 -8.87297 -7.86199 -5.17543 -0.78390 -0.12163 0.58018 1.01353 1.17049 1.43252 1.44995 1.53107 2.00131 2.11461 2.47514 3.32950 3.39171 3.68614 3.99828 4.02363 4.11006 4.25265 4.35520 4.61881 4.71273 4.72279 4.85861 4.92617 5.08286 5.09536 5.11151 5.31283 5.35703 5.62926 5.76165 5.99490 6.36122 6.96481 7.01066 7.66503 8.60960 9.30702 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.004742 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.929227 B = 5902.819509 C = 7177.538748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.211 4.211 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.150 3.850 11 C -0.129 4.129 12 C 0.130 3.870 13 H 0.073 0.927 14 C 0.131 3.869 15 N -0.708 5.708 16 C 0.586 3.414 17 O -0.568 6.568 18 C -0.281 4.281 19 C -0.044 4.044 20 C -0.129 4.129 21 C -0.172 4.172 22 Cl 0.002 6.998 23 S 0.264 5.736 24 H 0.245 0.755 25 H 0.023 0.977 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.403 0.597 32 H 0.169 0.831 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.126 -9.401 -4.138 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.340 4.340 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.167 4.167 12 C 0.024 3.976 13 H 0.090 0.910 14 C 0.007 3.993 15 N -0.358 5.358 16 C 0.373 3.627 17 O -0.450 6.450 18 C -0.402 4.402 19 C -0.078 4.078 20 C -0.161 4.161 21 C -0.318 4.318 22 Cl 0.030 6.970 23 S 0.531 5.469 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.239 0.761 32 H 0.187 0.813 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.205 -8.932 -4.616 18.228 hybrid contribution 1.208 1.248 0.465 1.798 sum 16.412 -7.684 -4.151 18.592 Atomic orbital electron populations 1.69994 1.06191 1.25058 1.58976 1.25455 0.96362 1.00307 1.03944 0.85281 0.78565 0.80726 0.76546 1.18886 1.21988 1.22636 1.19293 0.90572 0.83080 1.41013 0.89927 1.46436 1.03338 0.99912 1.85923 1.22173 0.87048 0.91841 0.96503 1.23559 0.94804 0.97836 1.00526 1.22712 0.93321 0.84729 0.96875 0.91008 1.21676 0.81804 0.99922 0.95914 1.45873 1.06018 1.62655 1.21212 1.17150 0.82800 0.78046 0.84720 1.90789 1.87402 1.46590 1.20254 1.24690 0.98069 1.15533 1.01944 1.20847 0.88935 0.96774 1.01217 1.20267 1.03134 1.01100 0.91642 1.25181 0.98293 1.10302 0.98049 1.98390 1.63797 1.84046 1.50752 1.83469 0.96971 1.54354 1.12077 0.94601 0.95939 0.94297 0.88651 0.90229 0.89384 0.93364 0.76142 0.81323 0.80068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 11.39 21.65 0.25 -56.47 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.43 29.55 68.60 2.03 47.46 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 7 C -0.21 -11.15 10.51 84.03 0.88 -10.27 16 8 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 9 N -0.63 -29.82 3.57 -694.10 -2.48 -32.30 16 10 C 0.15 6.72 7.51 86.48 0.65 7.37 16 11 C -0.13 -4.28 7.86 31.26 0.25 -4.03 16 12 C 0.13 4.60 4.33 45.09 0.20 4.79 16 13 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 14 C 0.13 4.44 5.54 86.38 0.48 4.92 16 15 N -0.71 -23.12 5.52 -467.27 -2.58 -25.70 16 16 C 0.59 19.45 7.78 86.39 0.67 20.12 16 17 O -0.57 -22.09 16.84 -4.42 -0.07 -22.16 16 18 C -0.28 -7.56 6.45 24.05 0.16 -7.41 16 19 C -0.04 -0.98 10.01 21.71 0.22 -0.76 16 20 C -0.13 -2.35 10.08 21.11 0.21 -2.13 16 21 C -0.17 -3.44 6.82 66.86 0.46 -2.98 16 22 Cl 0.00 0.03 29.27 -2.72 -0.08 -0.05 16 23 S 0.26 6.05 22.15 -56.49 -1.25 4.80 16 24 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 2.01 7.16 -2.39 -0.02 1.99 16 27 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.40 12.51 7.58 -92.71 -0.70 11.81 16 32 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -66.98 317.77 0.88 -66.09 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.44 Total: 12.05 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.63 Total: 6.28 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.82 Total: -114.47 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.25 Total: 4.80 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -66.98 0.88 -66.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038989801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.740 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds