Wall clock time and date at job start Tue Mar 31 2020 07:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99862 * 2 1 4 4 H 1.48498 * 109.47102 * 269.99719 * 3 2 1 5 5 H 1.48499 * 109.47318 * 30.00198 * 3 2 1 6 6 H 1.48510 * 109.47028 * 150.00272 * 3 2 1 7 7 C 1.38816 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99927 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00336 * 180.02562 * 9 7 2 11 11 F 1.39900 * 109.46722 * 60.00320 * 10 9 7 12 12 F 1.39900 * 109.47046 * 300.00329 * 10 9 7 13 13 C 1.50694 * 109.47200 * 180.02562 * 10 9 7 14 14 C 1.39455 * 120.00215 * 55.00066 * 13 10 9 15 15 N 1.31120 * 121.70627 * 180.28023 * 14 13 10 16 16 C 1.33295 * 121.17055 * 359.48089 * 15 14 13 17 17 C 1.41128 * 121.92503 * 180.25341 * 16 15 14 18 18 Cl 1.73606 * 120.80357 * 0.27237 * 17 16 15 19 19 N 1.31812 * 118.39339 * 180.25647 * 17 16 15 20 20 C 1.32483 * 121.67575 * 359.97438 * 19 17 16 21 21 N 1.31172 * 122.74594 * 0.02562 * 20 19 17 22 22 C 1.33744 * 120.28735 * 359.95594 * 21 20 19 23 23 C 1.36592 * 119.99931 * 235.02567 * 13 10 9 24 24 H 0.96993 * 119.99873 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99361 * 0.02562 * 9 7 2 26 26 H 1.08002 * 119.14288 * 359.97438 * 14 13 10 27 27 H 1.08000 * 118.63144 * 180.02562 * 20 19 17 28 28 H 1.08000 * 120.97176 * 359.97438 * 23 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0005 11 9 2.8624 -3.7309 1.1418 12 9 2.8625 -3.7309 -1.1428 13 6 1.0789 -4.8023 -0.0012 14 6 0.0996 -4.8819 -0.9909 15 7 -0.7724 -5.8606 -1.0202 16 6 -0.7521 -6.8305 -0.1060 17 6 -1.6796 -7.8940 -0.1256 18 17 -2.8967 -7.9897 -1.3598 19 7 -1.5991 -8.8132 0.8158 20 6 -0.6769 -8.7577 1.7653 21 7 0.2115 -7.7952 1.8362 22 6 0.2160 -6.8133 0.9281 23 6 1.1501 -5.7622 0.9679 24 1 -0.4849 0.8400 0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 0.0554 -4.1150 -1.7500 27 1 -0.6555 -9.5375 2.5122 28 1 1.9020 -5.7160 1.7418 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:37 Heat of formation + Delta-G solvation = -1.895779 kcal Electronic energy + Delta-G solvation = -21264.621729 eV Core-core repulsion = 17399.460663 eV Total energy + Delta-G solvation = -3865.161065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 300.028 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.16708 -46.26579 -41.89667 -38.92482 -37.18162 -34.82631 -34.50666 -32.82683 -31.39336 -30.67041 -26.81347 -25.52912 -24.28157 -23.12213 -22.28866 -19.46182 -18.86006 -18.08552 -17.68520 -16.81284 -16.63871 -15.95886 -15.85189 -15.69503 -14.46819 -14.32619 -14.00223 -13.55206 -13.47797 -13.19464 -12.95352 -12.81384 -12.61029 -12.55293 -12.36885 -11.75609 -11.42402 -11.14389 -11.08420 -10.97022 -10.48718 -10.34188 -10.11248 -9.81008 -9.68358 -9.38760 -9.10510 -7.80071 -6.15168 -3.55963 -0.39461 0.09580 1.26001 1.38261 2.51319 3.28776 3.31848 3.35456 3.42080 3.57772 3.62539 3.64477 3.88397 4.29220 4.39958 4.54358 4.55447 4.85497 4.87789 5.15792 5.25946 5.42543 5.66899 5.69998 6.01437 6.08756 6.37223 7.35585 7.39825 7.54553 7.90603 9.08618 9.36690 9.78022 11.04701 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.004105 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.284438 B = 6819.210407 C = 7410.408666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.009 3.991 3 Si 0.921 3.079 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.272 4.272 8 H 0.083 0.917 9 N -0.713 5.713 10 C 0.554 3.446 11 F -0.206 7.206 12 F -0.204 7.204 13 C -0.145 4.145 14 C 0.184 3.816 15 N -0.439 5.439 16 C 0.038 3.962 17 C 0.280 3.720 18 Cl 0.019 6.981 19 N -0.508 5.508 20 C 0.309 3.691 21 N -0.484 5.484 22 C 0.119 3.881 23 C -0.014 4.014 24 H 0.264 0.736 25 H 0.403 0.597 26 H 0.186 0.814 27 H 0.212 0.788 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -15.490 0.300 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.750 3.250 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.401 4.401 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.425 3.575 11 F -0.188 7.188 12 F -0.186 7.186 13 C -0.153 4.153 14 C 0.010 3.990 15 N -0.147 5.147 16 C -0.089 4.089 17 C 0.092 3.908 18 Cl 0.048 6.952 19 N -0.226 5.226 20 C 0.021 3.979 21 N -0.198 5.198 22 C -0.011 4.011 23 C -0.042 4.042 24 H 0.074 0.926 25 H 0.241 0.759 26 H 0.203 0.797 27 H 0.228 0.772 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.887 -16.136 0.374 16.396 hybrid contribution 0.670 1.496 0.037 1.640 sum -2.217 -14.640 0.411 14.813 Atomic orbital electron populations 1.69657 1.05375 1.27027 1.54272 1.24880 0.95653 0.98313 1.00129 0.85997 0.78843 0.82185 0.77980 1.20925 1.21286 1.20109 1.19237 0.91803 0.82748 1.46307 0.89864 1.43435 1.06936 0.99179 1.86623 1.17467 0.79092 0.86866 0.74071 1.93034 1.76742 1.96550 1.52481 1.93092 1.76567 1.96608 1.52342 1.21371 0.99329 0.96983 0.97602 1.23197 0.86581 0.94010 0.95207 1.68101 1.22918 1.01095 1.22617 1.19928 0.96953 0.96579 0.95452 1.22358 0.89223 0.88755 0.90496 1.98457 1.51216 1.97341 1.48226 1.67767 1.24593 1.26807 1.03442 1.24980 0.84719 0.94909 0.93301 1.68602 1.24271 1.02206 1.24721 1.19535 0.94992 0.94928 0.91643 1.21195 0.96187 0.89411 0.97362 0.92582 0.75854 0.79700 0.77217 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.49 13.06 55.49 0.72 -24.77 15 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 15 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.27 -7.13 9.68 -15.06 -0.15 -7.28 15 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 15 9 N -0.71 -16.68 5.36 -59.64 -0.32 -17.00 15 10 C 0.55 10.98 2.38 -5.20 -0.01 10.96 15 11 F -0.21 -4.17 15.76 2.25 0.04 -4.14 15 12 F -0.20 -4.14 17.05 2.25 0.04 -4.10 15 13 C -0.15 -2.38 5.15 -104.77 -0.54 -2.92 15 14 C 0.18 2.85 10.27 -17.40 -0.18 2.67 15 15 N -0.44 -6.73 9.94 -10.88 -0.11 -6.84 15 16 C 0.04 0.57 6.62 -84.82 -0.56 0.01 15 17 C 0.28 3.80 7.43 -16.46 -0.12 3.68 15 18 Cl 0.02 0.23 28.83 -51.86 -1.49 -1.27 15 19 N -0.51 -6.30 10.38 -11.20 -0.12 -6.41 15 20 C 0.31 3.38 12.23 -92.09 -1.13 2.25 15 21 N -0.48 -6.39 10.45 -12.56 -0.13 -6.52 15 22 C 0.12 1.75 6.62 -84.81 -0.56 1.19 15 23 C -0.01 -0.22 9.49 -39.26 -0.37 -0.59 15 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 25 H 0.40 9.58 7.31 -40.82 -0.30 9.28 15 26 H 0.19 2.72 8.06 -52.49 -0.42 2.30 15 27 H 0.21 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.17 2.33 7.21 -52.49 -0.38 1.95 15 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -28.74 283.84 -6.90 -35.64 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -1.07 Total: 4.99 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -3.72 Total: 10.11 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.05 Total: -61.54 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.49 Total: -1.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.74 -6.90 -35.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.743 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds