Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.37115 * 121.07715 * 17.89935 * 3 2 1 5 5 Cl 1.73600 * 120.50735 * 0.02562 * 4 3 2 6 6 N 1.36131 * 118.98607 * 179.97438 * 4 3 2 7 7 H 0.96997 * 119.31350 * 180.02562 * 6 4 3 8 8 C 1.35613 * 121.37920 * 359.97438 * 6 4 3 9 9 Cl 1.73599 * 118.77738 * 179.97438 * 8 6 4 10 10 N 1.30340 * 122.44149 * 0.28180 * 8 6 4 11 11 C 1.35296 * 120.78165 * 359.44557 * 10 8 6 12 12 N 1.31597 * 120.71479 * 180.25451 * 11 10 8 13 13 C 1.46496 * 120.00001 * 0.28392 * 12 11 10 14 14 C 1.53002 * 109.46989 * 120.00389 * 13 12 11 15 15 C 1.53005 * 109.46985 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47089 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47194 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47405 * 120.00074 * 20 18 16 23 23 H 1.48498 * 109.47090 * 239.99967 * 20 18 16 24 24 H 1.09002 * 109.47073 * 240.00117 * 13 12 11 25 25 H 1.08994 * 109.47470 * 359.97438 * 13 12 11 26 26 H 1.09002 * 109.46991 * 299.99778 * 14 13 12 27 27 H 1.08996 * 109.47150 * 60.00261 * 14 13 12 28 28 H 1.08997 * 109.46975 * 300.00147 * 15 14 13 29 29 H 1.09006 * 109.46801 * 59.99758 * 15 14 13 30 30 H 0.97006 * 119.99579 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2763 -1.1166 -0.3609 5 17 2.4509 -2.5697 -0.8308 6 7 4.6367 -1.0685 -0.3462 7 1 5.1425 -1.8560 -0.6010 8 6 5.2996 0.0576 0.0164 9 17 7.0356 0.0437 0.0116 10 7 4.6818 1.1482 0.3738 11 6 3.3302 1.2056 0.3874 12 7 2.7078 2.3089 0.7437 13 6 3.4792 3.4944 1.1253 14 6 3.1334 4.6519 0.1863 15 6 3.9386 5.8902 0.5853 16 6 3.5985 7.0301 -0.3400 17 1 2.8797 6.8858 -1.1330 18 6 4.2051 8.2570 -0.1742 19 7 5.0809 8.4326 0.7912 20 14 3.7831 9.6702 -1.3207 21 1 2.7778 9.2172 -2.3154 22 1 3.2261 10.7982 -0.5318 23 1 5.0102 10.1182 -2.0266 24 1 3.2344 3.7727 2.1504 25 1 4.5441 3.2736 1.0537 26 1 3.3782 4.3736 -0.8388 27 1 2.0685 4.8726 0.2585 28 1 3.6935 6.1683 1.6103 29 1 5.0037 5.6697 0.5134 30 1 5.5079 9.2958 0.9076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = 77.467529 kcal Electronic energy + Delta-G solvation = -18291.578412 eV Core-core repulsion = 14981.655478 eV Total energy + Delta-G solvation = -3309.922934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.024 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41177 -38.05173 -37.69945 -36.83473 -36.39578 -34.28339 -33.10271 -32.30888 -30.56668 -26.79806 -25.65134 -23.95593 -21.95540 -21.02109 -20.06249 -18.96880 -18.21939 -16.68505 -16.35096 -16.07996 -15.64969 -14.85804 -14.40278 -13.98652 -13.97164 -13.38477 -13.31168 -12.87879 -12.74076 -12.40247 -12.27038 -12.19247 -12.12071 -11.65334 -11.47340 -10.87278 -10.79699 -10.73228 -10.49336 -10.22673 -9.74631 -9.41707 -9.11572 -9.02782 -8.28313 -7.98118 -5.93479 -3.95076 0.03247 0.08767 0.56877 0.90065 2.10133 2.64656 2.77164 3.35361 3.35809 3.42748 3.43576 3.48298 3.97382 4.12272 4.52067 4.64366 5.10974 5.42123 5.43173 5.90611 5.97780 6.16537 6.41296 6.78749 6.93787 7.18066 7.25876 7.37345 7.75537 7.84170 7.92373 8.07369 8.50835 9.11907 9.68404 11.17962 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.003356 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.763390 B = 8341.124177 C = 9512.717960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C 0.275 3.725 3 C -0.063 4.063 4 C 0.238 3.762 5 Cl 0.019 6.981 6 N -0.621 5.621 7 H 0.430 0.570 8 C 0.441 3.559 9 Cl 0.045 6.955 10 N -0.496 5.496 11 C 0.337 3.663 12 N -0.473 5.473 13 C 0.038 3.962 14 C -0.096 4.096 15 C 0.024 3.976 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -28.370 -2.511 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.042 4.042 3 C -0.081 4.081 4 C 0.098 3.902 5 Cl 0.048 6.952 6 N -0.250 5.250 7 H 0.270 0.730 8 C 0.138 3.862 9 Cl 0.073 6.927 10 N -0.221 5.221 11 C 0.057 3.943 12 N -0.189 5.189 13 C -0.091 4.091 14 C -0.134 4.134 15 C -0.014 4.014 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.778 -26.866 -1.980 26.997 hybrid contribution 1.154 -0.294 -0.964 1.533 sum 2.932 -27.160 -2.944 27.476 Atomic orbital electron populations 1.81215 1.11107 1.06394 1.07606 1.24196 0.91021 0.94391 0.94555 1.16387 0.86632 0.92429 1.12644 1.20886 0.82481 0.89782 0.97002 1.98518 1.74736 1.32500 1.89417 1.41961 1.03785 1.15570 1.63716 0.73018 1.22888 0.88510 0.82996 0.91831 1.98533 1.00257 1.97752 1.96158 1.69036 1.10915 1.20925 1.21208 1.20307 0.82612 0.92439 0.98979 1.73160 1.35844 0.99231 1.10663 1.22434 0.97538 0.88842 1.00251 1.21603 1.00951 0.94034 0.96855 1.19081 0.95005 0.90463 0.96845 1.21286 1.23872 0.95623 1.14716 0.92677 1.25016 0.95186 0.98733 0.95562 1.69983 1.28132 1.23886 1.31558 0.86547 0.78198 0.82409 0.80931 1.19753 1.21022 1.21045 0.89876 0.91409 0.93637 0.92815 0.96467 0.96433 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.95 18.54 41.84 0.78 -5.17 16 2 C 0.27 3.76 14.17 -22.47 -0.32 3.44 16 3 C -0.06 -0.74 5.91 -104.50 -0.62 -1.36 16 4 C 0.24 1.80 7.40 -16.05 -0.12 1.68 16 5 Cl 0.02 0.11 28.21 -51.86 -1.46 -1.35 16 6 N -0.62 -3.43 5.27 -7.93 -0.04 -3.47 16 7 H 0.43 0.63 8.77 -40.82 -0.36 0.27 16 8 C 0.44 3.82 8.25 -89.99 -0.74 3.08 16 9 Cl 0.05 0.31 29.18 -51.86 -1.51 -1.21 16 10 N -0.50 -6.63 8.79 -9.22 -0.08 -6.71 16 11 C 0.34 5.04 7.61 -155.66 -1.18 3.86 16 12 N -0.47 -8.70 10.17 -58.94 -0.60 -9.30 16 13 C 0.04 0.76 6.35 -4.04 -0.03 0.73 16 14 C -0.10 -2.22 5.48 -26.73 -0.15 -2.36 16 15 C 0.02 0.64 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -15.30 9.11 -34.44 -0.31 -15.62 16 17 H 0.05 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 20 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 25 H 0.07 1.33 6.71 -51.93 -0.35 0.98 16 26 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -35.11 311.26 -8.58 -43.69 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -2.36 Total: -7.13 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.70 Total: -4.49 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.79 Total: -51.51 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -2.98 Total: -2.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.11 -8.58 -43.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.156 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds