Wall clock time and date at job start Tue Mar 31 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.37115 * 121.07715 * 17.89935 * 3 2 1 5 5 Cl 1.73600 * 120.50735 * 0.02562 * 4 3 2 6 6 N 1.36131 * 118.98607 * 179.97438 * 4 3 2 7 7 H 0.96997 * 119.31350 * 180.02562 * 6 4 3 8 8 C 1.35613 * 121.37920 * 359.97438 * 6 4 3 9 9 Cl 1.73599 * 118.77738 * 179.97438 * 8 6 4 10 10 N 1.30340 * 122.44149 * 0.28180 * 8 6 4 11 11 C 1.35296 * 120.78165 * 359.44557 * 10 8 6 12 12 N 1.31597 * 120.71479 * 180.25451 * 11 10 8 13 13 C 1.46496 * 120.00001 * 0.28392 * 12 11 10 14 14 C 1.53002 * 109.46989 * 120.00389 * 13 12 11 15 15 C 1.53005 * 109.46985 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47089 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47194 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47405 * 120.00074 * 20 18 16 23 23 H 1.48498 * 109.47090 * 239.99967 * 20 18 16 24 24 H 1.09002 * 109.47073 * 240.00117 * 13 12 11 25 25 H 1.08994 * 109.47470 * 359.97438 * 13 12 11 26 26 H 1.09002 * 109.46991 * 299.99778 * 14 13 12 27 27 H 1.08996 * 109.47150 * 60.00261 * 14 13 12 28 28 H 1.08997 * 109.46975 * 300.00147 * 15 14 13 29 29 H 1.09006 * 109.46801 * 59.99758 * 15 14 13 30 30 H 0.97006 * 119.99579 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2763 -1.1166 -0.3609 5 17 2.4509 -2.5697 -0.8308 6 7 4.6367 -1.0685 -0.3462 7 1 5.1425 -1.8560 -0.6010 8 6 5.2996 0.0576 0.0164 9 17 7.0356 0.0437 0.0116 10 7 4.6818 1.1482 0.3738 11 6 3.3302 1.2056 0.3874 12 7 2.7078 2.3089 0.7437 13 6 3.4792 3.4944 1.1253 14 6 3.1334 4.6519 0.1863 15 6 3.9386 5.8902 0.5853 16 6 3.5985 7.0301 -0.3400 17 1 2.8797 6.8858 -1.1330 18 6 4.2051 8.2570 -0.1742 19 7 5.0809 8.4326 0.7912 20 14 3.7831 9.6702 -1.3207 21 1 2.7778 9.2172 -2.3154 22 1 3.2261 10.7982 -0.5318 23 1 5.0102 10.1182 -2.0266 24 1 3.2344 3.7727 2.1504 25 1 4.5441 3.2736 1.0537 26 1 3.3782 4.3736 -0.8388 27 1 2.0685 4.8726 0.2585 28 1 3.6935 6.1683 1.6103 29 1 5.0037 5.6697 0.5134 30 1 5.5079 9.2958 0.9076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:30 Heat of formation + Delta-G solvation = 53.766707 kcal Electronic energy + Delta-G solvation = -18292.606157 eV Core-core repulsion = 14981.655478 eV Total energy + Delta-G solvation = -3310.950679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31601 -38.78904 -38.54545 -37.81930 -37.53221 -35.98542 -34.52821 -33.69630 -32.14084 -28.59674 -26.55364 -25.61560 -23.41016 -22.00209 -21.80021 -19.83100 -19.24723 -18.43460 -17.55418 -17.21044 -16.56298 -16.52880 -16.06953 -15.53214 -14.90872 -14.61132 -14.37339 -14.28104 -13.99791 -13.93673 -13.49431 -13.18106 -13.02988 -12.85229 -12.76416 -12.73064 -12.53293 -12.35533 -11.78756 -11.71157 -11.47423 -11.26600 -11.07311 -10.56357 -10.44827 -9.11599 -8.20080 -6.31641 -0.83515 -0.70339 -0.34240 0.13410 1.25669 1.38946 1.40017 1.53758 1.71905 1.73105 2.38172 2.42307 2.43807 2.99929 3.12045 3.17439 3.71541 4.06247 4.23551 4.37540 4.57595 4.71376 4.96914 5.12074 5.19154 5.38638 5.49679 5.71201 5.83123 6.23715 6.28054 6.37884 6.70018 6.83636 7.36997 8.91961 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.003356 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.763390 B = 8341.124177 C = 9512.717960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.292 3.708 3 C -0.108 4.108 4 C 0.289 3.711 5 Cl 0.057 6.943 6 N -0.590 5.590 7 H 0.456 0.544 8 C 0.464 3.536 9 Cl 0.076 6.924 10 N -0.546 5.546 11 C 0.366 3.634 12 N -0.541 5.541 13 C 0.059 3.941 14 C -0.080 4.080 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.273 1.273 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.042 0.958 28 H -0.006 1.006 29 H -0.003 1.003 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -30.818 -4.077 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.024 4.024 3 C -0.126 4.126 4 C 0.147 3.853 5 Cl 0.087 6.913 6 N -0.219 5.219 7 H 0.301 0.699 8 C 0.162 3.838 9 Cl 0.104 6.896 10 N -0.272 5.272 11 C 0.087 3.913 12 N -0.259 5.259 13 C -0.070 4.070 14 C -0.118 4.118 15 C -0.007 4.007 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.198 1.198 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.997 -29.406 -3.569 29.773 hybrid contribution 1.039 0.069 -0.556 1.180 sum 4.035 -29.338 -4.125 29.900 Atomic orbital electron populations 1.81215 1.12166 1.07579 1.09600 1.24392 0.91312 0.93358 0.93308 1.16124 0.85887 0.93125 1.17487 1.20840 0.82804 0.89531 0.92129 1.98560 1.74246 1.29956 1.88570 1.42038 1.03312 1.15777 1.60750 0.69873 1.23087 0.89585 0.82458 0.88669 1.98564 0.97695 1.97625 1.95741 1.69024 1.10430 1.23386 1.24374 1.20596 0.83576 0.92205 0.94943 1.73132 1.35608 0.99923 1.17253 1.21914 0.97396 0.89120 0.98590 1.21305 0.99240 0.93938 0.97351 1.18933 0.94326 0.92105 0.95294 1.21661 1.24384 0.96970 1.15330 0.92796 1.25976 0.94756 1.01670 0.97252 1.70105 1.28884 1.24972 1.33087 0.85371 0.78389 0.78432 0.78683 1.19019 1.20108 1.19813 0.91214 0.91813 0.94244 0.93949 0.98770 0.98417 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -13.32 18.54 19.01 0.35 -12.97 16 2 C 0.29 7.93 14.17 88.33 1.25 9.18 16 3 C -0.11 -2.43 5.91 -19.78 -0.12 -2.54 16 4 C 0.29 3.47 7.40 83.76 0.62 4.09 16 5 Cl 0.06 0.45 28.21 -2.72 -0.08 0.38 16 6 N -0.59 -4.23 5.27 -178.99 -0.94 -5.18 16 7 H 0.46 -1.04 8.77 -92.71 -0.81 -1.85 16 8 C 0.46 6.80 8.25 180.13 1.49 8.29 16 9 Cl 0.08 0.81 29.18 -2.72 -0.08 0.73 16 10 N -0.55 -14.14 8.79 -183.10 -1.61 -15.75 16 11 C 0.37 10.99 7.61 136.82 1.04 12.03 16 12 N -0.54 -20.84 10.17 -340.39 -3.46 -24.30 16 13 C 0.06 2.51 6.35 86.38 0.55 3.06 16 14 C -0.08 -3.92 5.48 30.60 0.17 -3.75 16 15 C 0.03 1.79 4.97 29.85 0.15 1.93 16 16 C -0.55 -33.35 9.11 25.60 0.23 -33.12 16 17 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 20 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.06 2.65 6.71 -2.39 -0.02 2.63 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 30 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -80.37 311.26 2.74 -77.64 By element: Atomic # 1 Polarization: -10.73 SS G_CDS: 0.40 Total: -10.33 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.84 Total: -0.28 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -5.38 Total: -116.36 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 17 Polarization: 1.26 SS G_CDS: -0.16 Total: 1.10 kcal Total: -80.37 2.74 -77.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.405 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds