Wall clock time and date at job start Tue Mar 31 2020 07:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48498 * 109.47309 * 239.99996 * 3 2 1 5 5 H 1.48493 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47047 * 120.00253 * 3 2 1 7 7 C 1.37888 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47113 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47063 * 179.97438 * 10 9 7 12 12 C 1.42905 * 113.99698 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.35045 * 329.32541 * 12 11 10 14 14 C 1.54343 * 110.29885 * 207.19994 * 12 11 10 15 15 C 1.54349 * 102.39500 * 214.72035 * 14 12 11 16 16 C 1.51377 * 105.16975 * 26.35632 * 15 14 12 17 17 C 1.38492 * 130.36565 * 162.82603 * 16 15 14 18 18 C 1.38194 * 120.22372 * 179.73903 * 17 16 15 19 19 Cl 1.73598 * 120.05330 * 180.26301 * 18 17 16 20 20 C 1.38481 * 119.89664 * 0.52003 * 18 17 16 21 21 Cl 1.73599 * 120.05700 * 179.74289 * 20 18 17 22 22 C 1.38194 * 119.89074 * 359.46198 * 20 18 17 23 23 C 1.38231 * 109.75413 * 342.80841 * 16 15 14 24 24 H 0.97005 * 119.99149 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47541 * 59.99343 * 9 7 2 26 26 H 1.09005 * 109.46651 * 299.99988 * 9 7 2 27 27 H 1.09003 * 109.46853 * 59.99650 * 10 9 7 28 28 H 1.09000 * 109.47298 * 300.00030 * 10 9 7 29 29 H 1.08993 * 110.82518 * 332.94748 * 14 12 11 30 30 H 1.08998 * 110.82041 * 96.30395 * 14 12 11 31 31 H 1.08999 * 110.30611 * 145.28098 * 15 14 12 32 32 H 1.09007 * 110.29992 * 267.34134 * 15 14 12 33 33 H 1.08004 * 119.88620 * 359.97438 * 17 16 15 34 34 H 1.08005 * 119.88757 * 180.29792 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 8 1.5305 -4.8996 -0.0020 12 6 2.3704 -6.0558 -0.0012 13 1 3.3047 -5.8459 -0.5218 14 6 1.6440 -7.2458 -0.6634 15 6 2.1622 -8.4473 0.1553 16 6 2.5292 -7.8761 1.5082 17 6 2.7418 -8.5093 2.7214 18 6 3.0780 -7.7724 3.8412 19 17 3.3502 -8.5714 5.3582 20 6 3.1922 -6.3952 3.7525 21 17 3.6078 -5.4648 5.1580 22 6 2.9805 -5.7631 2.5419 23 6 2.6488 -6.5019 1.4183 24 1 -0.4849 0.8402 0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 2.8711 -3.6048 0.8891 28 1 2.8724 -3.6041 -0.8909 29 1 0.5635 -7.1451 -0.5622 30 1 1.9265 -7.3371 -1.7122 31 1 1.3794 -9.1984 0.2615 32 1 3.0396 -8.8814 -0.3242 33 1 2.6483 -9.5829 2.7918 34 1 3.0743 -4.6895 2.4717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:29 Heat of formation + Delta-G solvation = -49.450141 kcal Electronic energy + Delta-G solvation = -19191.657002 eV Core-core repulsion = 15947.478097 eV Total energy + Delta-G solvation = -3244.178905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50902 -37.76499 -36.62318 -36.60599 -34.78625 -33.15485 -31.32115 -29.93672 -28.93155 -26.63620 -24.47829 -23.18795 -21.43853 -21.06228 -20.64364 -17.24647 -16.92311 -16.24634 -15.87828 -15.76539 -14.77482 -14.61273 -14.46616 -14.07873 -13.90539 -13.58604 -12.82858 -12.37926 -12.26671 -12.15060 -11.99432 -11.79516 -11.70836 -11.57526 -11.16500 -11.06687 -10.96912 -10.91943 -10.62016 -10.47292 -10.37341 -9.53689 -9.25430 -9.06817 -8.96956 -8.57192 -8.38416 -6.05573 -4.09668 0.79489 0.97584 1.72234 2.08001 3.24434 3.30863 3.35488 3.37362 4.14887 4.23048 4.34719 4.47877 4.67170 4.86119 4.91876 5.11242 5.21059 5.30629 5.35013 5.44696 5.56857 5.65612 5.76733 5.82874 5.98462 6.01275 6.18059 6.22761 6.32863 6.44963 6.81087 7.46376 7.73647 7.75807 8.03781 8.31476 8.96486 9.54382 11.05907 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.003929 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.798992 B = 7123.961547 C = 8578.551654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.064 3.936 11 O -0.372 6.372 12 C 0.123 3.877 13 H 0.079 0.921 14 C -0.115 4.115 15 C -0.078 4.078 16 C -0.079 4.079 17 C -0.092 4.092 18 C -0.030 4.030 19 Cl -0.055 7.055 20 C -0.031 4.031 21 Cl -0.048 7.048 22 C -0.072 4.072 23 C -0.094 4.094 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -19.777 4.562 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.012 4.012 11 O -0.291 6.291 12 C 0.065 3.935 13 H 0.097 0.903 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.080 4.080 17 C -0.111 4.111 18 C -0.058 4.058 19 Cl -0.026 7.026 20 C -0.059 4.059 21 Cl -0.019 7.019 22 C -0.090 4.090 23 C -0.095 4.095 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.499 -19.639 4.828 21.242 hybrid contribution 0.829 1.061 0.471 1.427 sum 7.328 -18.577 5.299 20.661 Atomic orbital electron populations 1.69969 1.06077 1.26923 1.49875 1.24981 0.94859 0.99262 0.95023 0.86602 0.79553 0.82853 0.78683 1.20149 1.21155 1.20133 1.20996 0.92946 0.90527 1.51991 0.92600 1.19063 0.94180 0.89326 0.98527 1.23046 0.96569 0.83256 0.98293 1.88072 1.33209 1.13446 1.94416 1.21574 0.94724 0.88019 0.89209 0.90344 1.22419 1.02159 0.91449 0.99173 1.21060 1.01609 0.98262 0.90576 1.20540 0.98371 0.94257 0.94790 1.20342 1.00763 1.00184 0.89820 1.20530 1.05761 0.90805 0.88693 1.98375 1.94743 1.79534 1.29921 1.20594 1.05193 0.90086 0.90024 1.98391 1.91624 1.72734 1.39186 1.20686 0.97610 1.01404 0.89325 1.21297 0.97359 0.94105 0.96711 0.92754 0.95678 0.95706 0.94608 0.94347 0.89244 0.89574 0.89848 0.89464 0.84307 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 10 C 0.06 1.33 5.68 37.16 0.21 1.54 16 11 O -0.37 -7.08 10.03 -35.23 -0.35 -7.43 16 12 C 0.12 1.76 3.32 -26.85 -0.09 1.67 16 13 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 14 C -0.11 -1.24 6.80 -25.32 -0.17 -1.42 16 15 C -0.08 -0.69 6.77 -26.84 -0.18 -0.87 16 16 C -0.08 -0.91 6.14 -104.20 -0.64 -1.55 16 17 C -0.09 -1.01 9.82 -39.50 -0.39 -1.40 16 18 C -0.03 -0.38 6.32 -39.51 -0.25 -0.63 16 19 Cl -0.05 -0.61 27.97 -51.86 -1.45 -2.06 16 20 C -0.03 -0.44 6.32 -39.51 -0.25 -0.69 16 21 Cl -0.05 -0.66 27.97 -51.86 -1.45 -2.11 16 22 C -0.07 -1.07 9.63 -39.50 -0.38 -1.45 16 23 C -0.09 -1.32 5.81 -104.19 -0.61 -1.92 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.71 6.29 -51.93 -0.33 0.39 16 28 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.15 2.32 6.36 -52.48 -0.33 1.99 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -30.25 318.17 -10.04 -40.28 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -3.99 Total: -4.34 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -3.31 Total: -19.59 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.35 Total: -7.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.90 Total: -4.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.25 -10.04 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.167 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds