Wall clock time and date at job start Tue Mar 31 2020 07:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00449 * 2 1 4 4 H 1.48498 * 109.47309 * 239.99996 * 3 2 1 5 5 H 1.48493 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47047 * 120.00253 * 3 2 1 7 7 C 1.37888 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47113 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47063 * 179.97438 * 10 9 7 12 12 C 1.42905 * 113.99698 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.35045 * 329.32541 * 12 11 10 14 14 C 1.54343 * 110.29885 * 207.19994 * 12 11 10 15 15 C 1.54349 * 102.39500 * 214.72035 * 14 12 11 16 16 C 1.51377 * 105.16975 * 26.35632 * 15 14 12 17 17 C 1.38492 * 130.36565 * 162.82603 * 16 15 14 18 18 C 1.38194 * 120.22372 * 179.73903 * 17 16 15 19 19 Cl 1.73598 * 120.05330 * 180.26301 * 18 17 16 20 20 C 1.38481 * 119.89664 * 0.52003 * 18 17 16 21 21 Cl 1.73599 * 120.05700 * 179.74289 * 20 18 17 22 22 C 1.38194 * 119.89074 * 359.46198 * 20 18 17 23 23 C 1.38231 * 109.75413 * 342.80841 * 16 15 14 24 24 H 0.97005 * 119.99149 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47541 * 59.99343 * 9 7 2 26 26 H 1.09005 * 109.46651 * 299.99988 * 9 7 2 27 27 H 1.09003 * 109.46853 * 59.99650 * 10 9 7 28 28 H 1.09000 * 109.47298 * 300.00030 * 10 9 7 29 29 H 1.08993 * 110.82518 * 332.94748 * 14 12 11 30 30 H 1.08998 * 110.82041 * 96.30395 * 14 12 11 31 31 H 1.08999 * 110.30611 * 145.28098 * 15 14 12 32 32 H 1.09007 * 110.29992 * 267.34134 * 15 14 12 33 33 H 1.08004 * 119.88620 * 359.97438 * 17 16 15 34 34 H 1.08005 * 119.88757 * 180.29792 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 8 1.5305 -4.8996 -0.0020 12 6 2.3704 -6.0558 -0.0012 13 1 3.3047 -5.8459 -0.5218 14 6 1.6440 -7.2458 -0.6634 15 6 2.1622 -8.4473 0.1553 16 6 2.5292 -7.8761 1.5082 17 6 2.7418 -8.5093 2.7214 18 6 3.0780 -7.7724 3.8412 19 17 3.3502 -8.5714 5.3582 20 6 3.1922 -6.3952 3.7525 21 17 3.6078 -5.4648 5.1580 22 6 2.9805 -5.7631 2.5419 23 6 2.6488 -6.5019 1.4183 24 1 -0.4849 0.8402 0.0004 25 1 0.6245 -2.5563 -0.8919 26 1 0.6239 -2.5574 0.8881 27 1 2.8711 -3.6048 0.8891 28 1 2.8724 -3.6041 -0.8909 29 1 0.5635 -7.1451 -0.5622 30 1 1.9265 -7.3371 -1.7122 31 1 1.3794 -9.1984 0.2615 32 1 3.0396 -8.8814 -0.3242 33 1 2.6483 -9.5829 2.7918 34 1 3.0743 -4.6895 2.4717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:28 Heat of formation + Delta-G solvation = -65.165541 kcal Electronic energy + Delta-G solvation = -19192.338473 eV Core-core repulsion = 15947.478097 eV Total energy + Delta-G solvation = -3244.860376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50475 -38.96964 -37.78067 -37.60308 -35.91386 -35.13613 -32.43938 -31.77067 -29.89519 -27.79268 -26.37098 -24.14290 -23.02190 -22.18968 -21.82997 -18.77957 -18.20227 -17.63930 -17.10467 -16.87964 -16.56290 -16.09183 -15.53456 -15.27387 -14.91143 -14.73855 -14.35177 -13.99305 -13.66469 -13.13446 -13.06553 -12.96932 -12.88072 -12.71914 -12.57234 -12.47692 -12.40643 -12.31605 -11.96434 -11.92765 -11.51483 -11.44696 -11.36853 -10.67316 -10.43059 -9.98425 -9.54477 -8.24124 -6.37196 -0.19537 -0.00852 0.73873 1.08283 1.40305 1.43950 1.51879 2.24086 2.38038 2.95272 3.09956 3.30841 3.40175 3.72626 3.92062 3.96652 4.20045 4.26043 4.36818 4.40237 4.50575 4.58933 4.69844 4.78840 4.90040 4.93428 4.98488 5.15986 5.20969 5.35048 5.37895 5.50077 5.56957 5.72535 6.10644 6.39779 6.78472 7.32692 8.88581 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.003929 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.798992 B = 7123.961547 C = 8578.551654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.395 6.395 12 C 0.111 3.889 13 H 0.090 0.910 14 C -0.111 4.111 15 C -0.068 4.068 16 C -0.070 4.070 17 C -0.084 4.084 18 C -0.034 4.034 19 Cl -0.044 7.044 20 C -0.046 4.046 21 Cl -0.055 7.055 22 C -0.093 4.093 23 C -0.117 4.117 24 H 0.266 0.734 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.173 0.827 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -21.667 4.011 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.007 3.993 11 O -0.314 6.314 12 C 0.053 3.947 13 H 0.107 0.893 14 C -0.149 4.149 15 C -0.105 4.105 16 C -0.070 4.070 17 C -0.102 4.102 18 C -0.062 4.062 19 Cl -0.015 7.015 20 C -0.073 4.073 21 Cl -0.026 7.026 22 C -0.112 4.112 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.015 0.985 26 H 0.009 0.991 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.191 0.809 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.850 -21.553 4.276 23.333 hybrid contribution 0.380 1.547 0.668 1.727 sum 8.230 -20.007 4.945 22.191 Atomic orbital electron populations 1.70116 1.07994 1.28103 1.50812 1.26001 0.95761 1.03511 0.94278 0.85422 0.78220 0.77578 0.79372 1.18701 1.20748 1.19137 1.21436 0.93681 0.91485 1.51860 0.91501 1.18909 0.94576 0.91838 0.95440 1.22572 0.94806 0.82857 0.99060 1.88011 1.34667 1.14035 1.94702 1.22027 0.95212 0.87184 0.90236 0.89266 1.22492 1.01086 0.90597 1.00679 1.21156 1.03476 0.97553 0.88286 1.20900 0.96726 0.93125 0.96294 1.20700 0.99028 1.01686 0.88791 1.20704 1.05380 0.90330 0.89748 1.98378 1.94649 1.79068 1.29381 1.20655 1.06234 0.90877 0.89540 1.98379 1.91751 1.73127 1.39391 1.20600 0.99395 1.00594 0.90562 1.21379 0.98580 0.95567 0.96239 0.92561 0.98498 0.99137 0.94103 0.93112 0.90537 0.87232 0.87324 0.86518 0.80936 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.63 5.34 29.85 0.16 1.79 16 10 C 0.08 3.56 5.68 71.98 0.41 3.97 16 11 O -0.39 -15.35 10.03 -148.98 -1.49 -16.84 16 12 C 0.11 3.07 3.32 30.52 0.10 3.17 16 13 H 0.09 2.22 7.85 -2.39 -0.02 2.21 16 14 C -0.11 -2.14 6.80 31.51 0.21 -1.93 16 15 C -0.07 -0.92 6.77 30.52 0.21 -0.71 16 16 C -0.07 -1.43 6.14 -19.59 -0.12 -1.55 16 17 C -0.08 -1.58 9.82 22.32 0.22 -1.36 16 18 C -0.03 -0.79 6.32 22.32 0.14 -0.65 16 19 Cl -0.04 -0.91 27.97 -2.72 -0.08 -0.99 16 20 C -0.05 -1.27 6.32 22.32 0.14 -1.13 16 21 Cl -0.06 -1.54 27.97 -2.72 -0.08 -1.61 16 22 C -0.09 -2.83 9.63 22.32 0.21 -2.62 16 23 C -0.12 -3.20 5.81 -19.59 -0.11 -3.31 16 24 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H 0.04 1.70 6.29 -2.39 -0.02 1.68 16 28 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 29 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.12 4.22 6.36 -2.91 -0.02 4.20 16 Total: -1.00 -67.92 318.17 4.05 -63.88 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 1.12 Total: 1.31 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 2.27 Total: -34.78 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.28 Total: -57.07 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.49 Total: -16.84 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.15 Total: -2.60 kcal Total: -67.92 4.05 -63.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.290 kcal (2) G-P(sol) polarization free energy of solvation -67.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds