Wall clock time and date at job start Tue Mar 31 2020 07:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48507 * 109.46904 * 270.00128 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99785 * 3 2 1 6 6 H 1.48499 * 109.47134 * 150.00306 * 3 2 1 7 7 C 1.37875 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99491 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.42901 * 114.00134 * 179.97438 * 11 10 9 13 13 H 1.08999 * 110.26744 * 27.92773 * 12 11 10 14 14 C 1.54340 * 110.29808 * 149.99846 * 12 11 10 15 15 C 1.54342 * 102.39137 * 92.57412 * 14 12 11 16 16 C 1.51375 * 105.17516 * 26.34984 * 15 14 12 17 17 C 1.38493 * 130.36850 * 162.82484 * 16 15 14 18 18 C 1.38182 * 120.22704 * 179.97438 * 17 16 15 19 19 Cl 1.73602 * 120.05336 * 179.97438 * 18 17 16 20 20 C 1.38480 * 119.89442 * 0.02562 * 18 17 16 21 21 Cl 1.73602 * 120.05287 * 179.97438 * 20 18 17 22 22 C 1.38188 * 119.89487 * 359.97438 * 20 18 17 23 23 C 1.38237 * 109.75074 * 342.81109 * 16 15 14 24 24 H 0.96999 * 120.00022 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46948 * 60.00235 * 9 7 2 26 26 H 1.08992 * 109.47473 * 300.00357 * 9 7 2 27 27 H 1.09001 * 109.47289 * 60.00043 * 10 9 7 28 28 H 1.09004 * 109.47261 * 300.00299 * 10 9 7 29 29 H 1.09010 * 110.82104 * 210.79340 * 14 12 11 30 30 H 1.08996 * 110.82681 * 334.14827 * 14 12 11 31 31 H 1.09004 * 110.30285 * 145.27548 * 15 14 12 32 32 H 1.08997 * 110.30463 * 267.32519 * 15 14 12 33 33 H 1.08005 * 119.88191 * 359.95792 * 17 16 15 34 34 H 1.08006 * 119.89021 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 8 1.5307 -4.8997 0.0020 12 6 2.3707 -6.0558 0.0012 13 1 3.3239 -5.8303 0.4793 14 6 1.6718 -7.2258 0.7255 15 6 0.9653 -7.9588 -0.4346 16 6 1.7855 -7.6361 -1.6652 17 6 1.8216 -8.2508 -2.9057 18 6 2.6620 -7.7746 -3.8939 19 17 2.7042 -8.5490 -5.4470 20 6 3.4713 -6.6792 -3.6429 21 17 4.5291 -6.0779 -4.8811 22 6 3.4355 -6.0656 -2.4053 23 6 2.5931 -6.5425 -1.4147 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8918 27 1 2.8726 -3.6040 0.8909 28 1 2.8713 -3.6047 -0.8890 29 1 2.4028 -7.8759 1.2065 30 1 0.9482 -6.8553 1.4516 31 1 0.9597 -9.0340 -0.2550 32 1 -0.0539 -7.5901 -0.5501 33 1 1.1910 -9.1055 -3.1013 34 1 4.0664 -5.2111 -2.2097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:32 Heat of formation + Delta-G solvation = -49.111692 kcal Electronic energy + Delta-G solvation = -19183.697106 eV Core-core repulsion = 15939.532878 eV Total energy + Delta-G solvation = -3244.164228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.042 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49754 -37.79954 -36.64417 -36.57054 -34.67536 -33.12239 -31.40621 -29.88270 -28.91318 -26.69904 -24.53130 -23.18512 -21.35164 -21.01757 -20.72081 -17.29706 -16.71670 -16.31829 -15.81838 -15.79945 -14.76144 -14.61462 -14.37274 -14.08704 -13.91420 -13.67843 -13.02987 -12.37749 -12.25558 -12.18198 -12.00540 -11.70270 -11.66167 -11.23450 -11.17374 -11.03626 -11.00730 -10.95511 -10.63252 -10.47663 -10.38438 -9.55377 -9.24162 -9.06674 -9.01735 -8.59087 -8.38819 -6.05755 -4.09679 0.79887 0.96660 1.70563 2.05366 3.23969 3.29585 3.35699 3.38443 4.09098 4.33207 4.35396 4.49820 4.70685 4.87475 4.91371 5.09802 5.25440 5.30584 5.42571 5.49345 5.62110 5.70360 5.76333 5.84765 5.96538 6.04809 6.17754 6.22951 6.35077 6.43692 6.81526 7.46316 7.73957 7.76037 8.03732 8.31627 8.96600 9.54370 11.05831 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.003841 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.808784 B = 7287.756795 C = 8512.356335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.065 3.935 11 O -0.369 6.369 12 C 0.124 3.876 13 H 0.072 0.928 14 C -0.117 4.117 15 C -0.079 4.079 16 C -0.066 4.066 17 C -0.094 4.094 18 C -0.026 4.026 19 Cl -0.054 7.054 20 C -0.034 4.034 21 Cl -0.051 7.051 22 C -0.072 4.072 23 C -0.097 4.097 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -19.731 -4.646 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.010 4.010 11 O -0.289 6.289 12 C 0.065 3.935 13 H 0.090 0.910 14 C -0.155 4.155 15 C -0.115 4.115 16 C -0.066 4.066 17 C -0.113 4.113 18 C -0.054 4.054 19 Cl -0.025 7.025 20 C -0.062 4.062 21 Cl -0.022 7.022 22 C -0.091 4.091 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.555 -19.623 -4.893 20.973 hybrid contribution 0.860 1.060 -0.512 1.458 sum 6.415 -18.563 -5.405 20.370 Atomic orbital electron populations 1.69980 1.06075 1.26806 1.50038 1.24985 0.94868 0.99285 0.95051 0.86538 0.79770 0.83170 0.78203 1.20544 1.21090 1.19800 1.21030 0.92981 0.90508 1.51772 0.92558 1.19061 0.94196 0.89356 0.98469 1.23020 0.96579 0.83115 0.98289 1.88065 1.33145 1.13317 1.94326 1.21410 0.94921 0.88168 0.89015 0.90988 1.22413 1.00422 0.95263 0.97373 1.21086 0.99230 1.00871 0.90359 1.20647 0.96321 0.95104 0.94550 1.20373 0.98824 1.01040 0.91082 1.20529 1.00160 0.95914 0.88794 1.98376 1.97752 1.79972 1.26402 1.20539 0.97235 0.96731 0.91664 1.98384 1.64004 1.87236 1.52564 1.20561 0.99043 0.99397 0.90085 1.21236 0.95305 0.95677 0.97614 0.92820 0.95768 0.95684 0.94338 0.94653 0.89871 0.88750 0.90190 0.88972 0.84251 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 10 C 0.07 1.38 5.71 37.16 0.21 1.59 16 11 O -0.37 -7.01 10.04 -35.23 -0.35 -7.37 16 12 C 0.12 1.76 3.35 -26.85 -0.09 1.67 16 13 H 0.07 0.94 7.81 -51.93 -0.41 0.54 16 14 C -0.12 -1.27 6.81 -25.33 -0.17 -1.44 16 15 C -0.08 -0.80 6.77 -26.85 -0.18 -0.98 16 16 C -0.07 -0.80 6.14 -104.20 -0.64 -1.44 16 17 C -0.09 -1.08 9.82 -39.51 -0.39 -1.47 16 18 C -0.03 -0.33 6.32 -39.51 -0.25 -0.58 16 19 Cl -0.05 -0.61 27.97 -51.86 -1.45 -2.06 16 20 C -0.03 -0.46 6.32 -39.51 -0.25 -0.71 16 21 Cl -0.05 -0.65 27.97 -51.86 -1.45 -2.10 16 22 C -0.07 -1.01 9.82 -39.50 -0.39 -1.40 16 23 C -0.10 -1.36 5.81 -104.20 -0.61 -1.97 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.14 1.91 8.05 -52.48 -0.42 1.49 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -30.42 321.93 -10.17 -40.59 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -4.17 Total: -4.70 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.31 Total: -19.64 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.35 Total: -7.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.90 Total: -4.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.42 -10.17 -40.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.522 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds