Wall clock time and date at job start Tue Mar 31 2020 07:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00243 * 2 1 4 4 C 1.50712 * 109.46978 * 293.95544 * 3 2 1 5 5 H 1.08000 * 119.99163 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99800 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00684 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99752 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46706 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47036 * 119.99633 * 8 6 4 11 11 H 1.48491 * 109.47226 * 240.00121 * 8 6 4 12 12 C 1.46899 * 111.00160 * 123.95234 * 2 1 3 13 13 C 1.50698 * 109.47367 * 75.86139 * 12 2 1 14 14 C 1.38422 * 120.43723 * 254.51600 * 13 12 2 15 15 C 1.38856 * 118.47500 * 179.71054 * 14 13 12 16 16 Br 1.89100 * 120.36634 * 180.25824 * 15 14 13 17 17 C 1.38175 * 119.26817 * 0.60400 * 15 14 13 18 18 N 1.31936 * 120.81917 * 359.65545 * 17 15 14 19 19 C 1.32269 * 121.65712 * 0.02562 * 18 17 15 20 20 O 1.35693 * 119.67070 * 180.02562 * 19 18 17 21 21 H 1.08995 * 109.47262 * 61.75377 * 1 2 3 22 22 H 1.09000 * 109.47247 * 181.76172 * 1 2 3 23 23 H 1.09000 * 109.47078 * 301.75751 * 1 2 3 24 24 H 1.09000 * 109.47422 * 53.95098 * 3 2 1 25 25 H 1.08998 * 109.47523 * 173.95841 * 3 2 1 26 26 H 0.96999 * 120.00238 * 179.97438 * 7 6 4 27 27 H 1.09008 * 109.47486 * 195.85843 * 12 2 1 28 28 H 1.08999 * 109.47188 * 315.85708 * 12 2 1 29 29 H 1.08001 * 120.75944 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.58948 * 179.68254 * 17 15 14 31 31 H 0.96701 * 113.99820 * 269.98688 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0738 1.5114 -2.0484 6 6 2.0267 3.3494 -1.5285 7 7 2.7111 4.0022 -0.6147 8 14 1.5817 4.1872 -3.1378 9 1 0.8135 3.2448 -3.9905 10 1 0.7540 5.3882 -2.8583 11 1 2.8230 4.5948 -3.8435 12 6 1.9954 -0.7659 1.1376 13 6 1.8515 -2.2402 0.8603 14 6 0.8752 -2.9824 1.5022 15 6 0.7749 -4.3365 1.2116 16 35 -0.5441 -5.3994 2.0521 17 6 1.6541 -4.9002 0.3070 18 7 2.5778 -4.1670 -0.2845 19 6 2.7001 -2.8732 -0.0382 20 8 3.6644 -2.1574 -0.6700 21 1 -0.3633 0.4863 -0.9052 22 1 -0.3634 -1.0272 0.0316 23 1 -0.3633 0.5409 0.8738 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3444 0.1082 26 1 2.9856 4.9183 -0.7768 27 1 3.0486 -0.5246 1.2820 28 1 1.4372 -0.5093 2.0379 29 1 0.2040 -2.5180 2.2096 30 1 1.5841 -5.9540 0.0810 31 1 4.5067 -2.1281 -0.1958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233182265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:56 Heat of formation + Delta-G solvation = 5.617441 kcal Electronic energy + Delta-G solvation = -16508.962421 eV Core-core repulsion = 13644.327327 eV Total energy + Delta-G solvation = -2864.635094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60838 -37.00595 -36.64309 -33.25008 -32.59683 -31.76698 -29.15681 -27.34835 -26.83375 -24.20688 -23.39299 -21.87981 -20.27663 -18.71873 -17.11986 -16.45021 -16.11007 -15.31333 -14.73227 -14.50697 -14.05416 -13.89563 -13.45583 -13.32515 -12.90725 -12.13181 -11.96377 -11.67557 -11.38877 -11.26475 -11.16546 -10.94145 -10.67912 -10.56199 -10.51600 -9.91138 -9.68956 -9.52295 -9.21623 -8.67891 -8.44869 -7.30892 -6.04023 -4.04638 0.74212 1.05958 1.36887 3.31246 3.38627 3.40302 3.44716 3.71476 4.42520 4.54052 4.64008 4.79037 4.92933 5.21245 5.32512 5.40792 5.60379 5.73772 5.91928 6.04256 6.07808 6.28001 6.31305 6.68974 7.21204 7.27253 7.59014 7.77807 7.82278 8.02986 8.14111 8.50228 9.02937 9.59670 11.06967 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.003634 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.224341 B = 7703.846264 C = 8092.341767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.528 5.528 3 C 0.195 3.805 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.099 3.901 13 C -0.122 4.122 14 C -0.033 4.033 15 C -0.161 4.161 16 Br -0.042 7.042 17 C 0.148 3.852 18 N -0.499 5.499 19 C 0.352 3.648 20 O -0.456 6.456 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.014 0.986 24 H -0.009 1.009 25 H 0.032 0.968 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 -19.244 8.326 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.252 5.252 3 C 0.071 3.929 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.030 4.030 13 C -0.127 4.127 14 C -0.061 4.061 15 C -0.243 4.243 16 Br 0.043 6.957 17 C -0.012 4.012 18 N -0.218 5.218 19 C 0.172 3.828 20 O -0.262 6.262 21 H 0.093 0.907 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.009 0.991 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.162 0.838 30 H 0.181 0.819 31 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.882 -19.889 7.197 21.505 hybrid contribution -0.384 1.528 0.577 1.677 sum -4.267 -18.362 7.774 20.391 Atomic orbital electron populations 1.22234 0.88816 0.98840 1.01187 1.62080 1.06830 1.17835 1.38456 1.19773 0.95409 0.80981 0.96764 1.21179 1.34641 0.96793 1.01624 0.91831 1.24966 0.95303 0.97317 0.96979 1.69957 1.38599 1.11415 1.34023 0.86449 0.78191 0.79264 0.83585 1.19655 1.21153 1.20969 1.20845 1.01320 0.87408 0.93398 1.21195 0.96776 0.98522 0.96192 1.21438 0.95849 0.91336 0.97461 1.22824 1.00665 0.95889 1.04939 1.96704 1.51481 1.68224 1.79330 1.22451 0.88686 0.99605 0.90451 1.67367 1.22549 1.07288 1.24601 1.19124 0.90526 0.85785 0.87343 1.84954 1.23553 1.69275 1.48458 0.90668 0.94110 0.96743 0.99119 0.95013 0.92995 0.89900 0.94410 0.83815 0.81872 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.17 60.06 0.55 1.29 16 2 N -0.53 -11.15 4.67 -245.83 -1.15 -12.30 16 3 C 0.20 4.97 4.70 -4.97 -0.02 4.94 16 4 C -0.50 -14.11 8.54 -34.44 -0.29 -14.40 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.42 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.10 1.67 4.77 -4.98 -0.02 1.64 16 13 C -0.12 -1.81 4.84 -104.32 -0.50 -2.32 16 14 C -0.03 -0.42 9.06 -39.29 -0.36 -0.78 16 15 C -0.16 -1.91 6.24 -39.38 -0.25 -2.16 16 16 Br -0.04 -0.41 33.73 -68.01 -2.29 -2.71 16 17 C 0.15 1.81 10.94 -17.53 -0.19 1.62 16 18 N -0.50 -7.40 10.39 -13.31 -0.14 -7.54 16 19 C 0.35 5.46 7.72 -17.13 -0.13 5.33 16 20 O -0.46 -7.21 12.91 -18.78 -0.24 -7.45 16 21 H 0.07 1.58 6.91 -51.93 -0.36 1.22 16 22 H 0.04 0.70 7.09 -51.93 -0.37 0.33 16 23 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 24 H -0.01 -0.24 8.11 -51.93 -0.42 -0.66 16 25 H 0.03 0.85 7.83 -51.93 -0.41 0.45 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.08 1.35 7.61 -51.92 -0.40 0.95 16 28 H 0.04 0.59 7.85 -51.93 -0.41 0.18 16 29 H 0.14 1.62 8.04 -52.49 -0.42 1.19 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.40 4.12 9.06 45.56 0.41 4.53 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -31.72 291.37 -7.75 -39.47 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -2.72 Total: -1.45 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.32 Total: -3.38 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.55 Total: -45.57 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.24 Total: -7.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.72 -7.75 -39.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233182265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.087 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds