Wall clock time and date at job start Tue Mar 31 2020 07:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00243 * 2 1 4 4 C 1.50712 * 109.46978 * 293.95544 * 3 2 1 5 5 H 1.08000 * 119.99163 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99800 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00684 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99752 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46706 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47036 * 119.99633 * 8 6 4 11 11 H 1.48491 * 109.47226 * 240.00121 * 8 6 4 12 12 C 1.46899 * 111.00160 * 123.95234 * 2 1 3 13 13 C 1.50698 * 109.47367 * 75.86139 * 12 2 1 14 14 C 1.38422 * 120.43723 * 254.51600 * 13 12 2 15 15 C 1.38856 * 118.47500 * 179.71054 * 14 13 12 16 16 Br 1.89100 * 120.36634 * 180.25824 * 15 14 13 17 17 C 1.38175 * 119.26817 * 0.60400 * 15 14 13 18 18 N 1.31936 * 120.81917 * 359.65545 * 17 15 14 19 19 C 1.32269 * 121.65712 * 0.02562 * 18 17 15 20 20 O 1.35693 * 119.67070 * 180.02562 * 19 18 17 21 21 H 1.08995 * 109.47262 * 61.75377 * 1 2 3 22 22 H 1.09000 * 109.47247 * 181.76172 * 1 2 3 23 23 H 1.09000 * 109.47078 * 301.75751 * 1 2 3 24 24 H 1.09000 * 109.47422 * 53.95098 * 3 2 1 25 25 H 1.08998 * 109.47523 * 173.95841 * 3 2 1 26 26 H 0.96999 * 120.00238 * 179.97438 * 7 6 4 27 27 H 1.09008 * 109.47486 * 195.85843 * 12 2 1 28 28 H 1.08999 * 109.47188 * 315.85708 * 12 2 1 29 29 H 1.08001 * 120.75944 * 359.97438 * 14 13 12 30 30 H 1.08000 * 119.58948 * 179.68254 * 17 15 14 31 31 H 0.96701 * 113.99820 * 269.98688 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0738 1.5114 -2.0484 6 6 2.0267 3.3494 -1.5285 7 7 2.7111 4.0022 -0.6147 8 14 1.5817 4.1872 -3.1378 9 1 0.8135 3.2448 -3.9905 10 1 0.7540 5.3882 -2.8583 11 1 2.8230 4.5948 -3.8435 12 6 1.9954 -0.7659 1.1376 13 6 1.8515 -2.2402 0.8603 14 6 0.8752 -2.9824 1.5022 15 6 0.7749 -4.3365 1.2116 16 35 -0.5441 -5.3994 2.0521 17 6 1.6541 -4.9002 0.3070 18 7 2.5778 -4.1670 -0.2845 19 6 2.7001 -2.8732 -0.0382 20 8 3.6644 -2.1574 -0.6700 21 1 -0.3633 0.4863 -0.9052 22 1 -0.3634 -1.0272 0.0316 23 1 -0.3633 0.5409 0.8738 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3444 0.1082 26 1 2.9856 4.9183 -0.7768 27 1 3.0486 -0.5246 1.2820 28 1 1.4372 -0.5093 2.0379 29 1 0.2040 -2.5180 2.2096 30 1 1.5841 -5.9540 0.0810 31 1 4.5067 -2.1281 -0.1958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233182265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:56 Heat of formation + Delta-G solvation = -19.336029 kcal Electronic energy + Delta-G solvation = -16510.044485 eV Core-core repulsion = 13644.327327 eV Total energy + Delta-G solvation = -2865.717158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 300.021 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69004 -38.32010 -38.04832 -34.93139 -33.95882 -33.04027 -30.19446 -29.22603 -28.23341 -25.91237 -24.48159 -23.34917 -21.85093 -19.82299 -18.53239 -18.19044 -17.22914 -16.86244 -16.24411 -15.97506 -15.66109 -15.38475 -14.64754 -14.35632 -14.27955 -13.84486 -13.53777 -13.12055 -12.97453 -12.75330 -12.64729 -12.46936 -12.31610 -12.16222 -11.84946 -11.43110 -11.32225 -10.75308 -10.60605 -10.54709 -9.70464 -9.00212 -8.19700 -6.28393 -0.28748 0.01838 0.45007 1.40293 1.41729 1.54689 2.35382 2.42760 2.67253 3.13256 3.35767 3.56266 3.69512 3.76801 3.96889 4.31575 4.41530 4.49156 4.65378 4.68978 4.78057 4.91702 5.05884 5.17977 5.28202 5.32056 5.65659 6.05789 6.31323 6.56236 6.63586 6.82179 6.87009 7.40930 8.91186 Molecular weight = 300.02amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.003634 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.224341 B = 7703.846264 C = 8092.341767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.540 5.540 3 C 0.212 3.788 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.103 3.897 13 C -0.135 4.135 14 C -0.026 4.026 15 C -0.161 4.161 16 Br -0.016 7.016 17 C 0.152 3.848 18 N -0.519 5.519 19 C 0.339 3.661 20 O -0.481 6.481 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.019 0.981 24 H -0.033 1.033 25 H 0.010 0.990 26 H 0.264 0.736 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.161 0.839 30 H 0.192 0.808 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 -20.628 8.354 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.264 5.264 3 C 0.086 3.914 4 C -0.559 4.559 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.573 5.573 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.025 4.025 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.242 4.242 16 Br 0.068 6.932 17 C -0.007 4.007 18 N -0.238 5.238 19 C 0.160 3.840 20 O -0.290 6.290 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.037 0.963 24 H -0.015 1.015 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.179 0.821 30 H 0.209 0.791 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.999 -21.295 7.242 23.041 hybrid contribution -0.067 1.812 0.645 1.925 sum -5.067 -19.483 7.887 21.620 Atomic orbital electron populations 1.22174 0.87788 1.00249 1.00300 1.61936 1.07855 1.15416 1.41227 1.19388 0.93919 0.83189 0.94899 1.21467 1.34631 0.97373 1.02448 0.92550 1.25808 0.95091 0.97989 1.00396 1.70063 1.39459 1.11870 1.35914 0.85413 0.78090 0.78222 0.79365 1.19225 1.20262 1.20386 1.20806 1.01166 0.88207 0.92350 1.20930 0.98211 0.97254 0.97616 1.21621 0.95074 0.91707 0.96926 1.22927 1.00928 0.95806 1.04570 1.96744 1.50259 1.67366 1.78800 1.22969 0.87627 1.00594 0.89537 1.67395 1.23791 1.07105 1.25522 1.19246 0.90758 0.86233 0.87743 1.84887 1.24841 1.69680 1.49608 0.92804 0.91487 0.96278 1.01501 0.97223 0.92686 0.90217 0.92982 0.82098 0.79111 0.72454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.17 127.69 1.17 2.83 16 2 N -0.54 -22.98 4.67 -931.66 -4.35 -27.33 16 3 C 0.21 11.09 4.70 85.56 0.40 11.49 16 4 C -0.52 -29.69 8.54 25.60 0.22 -29.47 16 5 H 0.06 3.23 7.10 -2.91 -0.02 3.21 16 6 C 0.01 0.30 5.46 84.65 0.46 0.76 16 7 N -0.93 -55.59 13.29 21.44 0.28 -55.30 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 C 0.10 3.43 4.77 85.56 0.41 3.83 16 13 C -0.14 -3.88 4.84 -19.67 -0.10 -3.97 16 14 C -0.03 -0.60 9.06 22.46 0.20 -0.40 16 15 C -0.16 -3.38 6.24 22.40 0.14 -3.24 16 16 Br -0.02 -0.27 33.73 -20.37 -0.69 -0.96 16 17 C 0.15 3.37 10.94 84.66 0.93 4.29 16 18 N -0.52 -14.71 10.39 -308.86 -3.21 -17.92 16 19 C 0.34 10.33 7.72 84.78 0.65 10.99 16 20 O -0.48 -15.37 12.91 -90.12 -1.16 -16.53 16 21 H 0.05 2.27 6.91 -2.39 -0.02 2.25 16 22 H 0.07 2.19 7.09 -2.39 -0.02 2.17 16 23 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 24 H -0.03 -1.83 8.11 -2.39 -0.02 -1.85 16 25 H 0.01 0.54 7.83 -2.39 -0.02 0.52 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.08 2.65 7.61 -2.38 -0.02 2.63 16 28 H 0.05 1.57 7.85 -2.39 -0.02 1.55 16 29 H 0.16 3.14 8.04 -2.91 -0.02 3.11 16 30 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.41 8.87 9.06 -74.06 -0.67 8.20 16 Total: -1.00 -67.62 291.37 -2.12 -69.75 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.48 Total: 4.46 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.49 Total: -2.89 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -7.27 Total: -100.56 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.16 Total: -16.53 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.69 Total: -0.96 kcal Total: -67.62 -2.12 -69.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233182265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.412 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds