Wall clock time and date at job start Tue Mar 31 2020 07:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39715 * 120.07883 * 161.54215 * 3 2 1 5 5 C 1.38139 * 120.08466 * 179.97438 * 4 3 2 6 6 Cl 1.73598 * 119.86779 * 180.02562 * 5 4 3 7 7 C 1.38265 * 120.25993 * 0.02562 * 5 4 3 8 8 C 1.39451 * 120.16701 * 0.02562 * 7 5 4 9 9 C 1.48301 * 120.04863 * 179.97438 * 8 7 5 10 10 C 1.39429 * 119.64956 * 4.97981 * 9 8 7 11 11 C 1.38219 * 119.14314 * 179.69923 * 10 9 8 12 12 C 1.39415 * 118.46021 * 0.57745 * 11 10 9 13 13 O 1.35715 * 120.39100 * 179.71112 * 12 11 10 14 14 C 1.34811 * 116.99758 * 5.19006 * 13 12 11 15 15 H 1.07994 * 119.99864 * 354.91906 * 14 13 12 16 16 C 1.38650 * 119.99803 * 174.92541 * 14 13 12 17 17 N 1.31561 * 120.00124 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 120.00185 * 359.71918 * 16 14 13 19 19 H 1.48494 * 109.47543 * 270.28136 * 18 16 14 20 20 H 1.48502 * 109.46661 * 30.28168 * 18 16 14 21 21 H 1.48497 * 109.47229 * 150.27694 * 18 16 14 22 22 C 1.38969 * 119.22338 * 359.44319 * 12 11 10 23 23 N 1.31658 * 120.78625 * 0.27239 * 22 12 11 24 24 C 1.39157 * 119.90549 * 0.25012 * 8 7 5 25 25 H 1.07995 * 119.95677 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.91449 * 179.97438 * 7 5 4 27 27 H 1.07991 * 120.42177 * 0.02562 * 10 9 8 28 28 H 1.08004 * 120.77138 * 180.32208 * 11 10 9 29 29 H 0.96996 * 119.99858 * 179.71846 * 17 16 14 30 30 H 1.08002 * 119.60265 * 180.24590 * 22 12 11 31 31 H 1.08000 * 120.12510 * 179.74720 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2677 1.1478 -0.3828 5 6 4.6491 1.1487 -0.3823 6 17 5.5128 2.5773 -0.8583 7 6 5.3465 0.0162 -0.0042 8 6 4.6589 -1.1349 0.3788 9 6 5.4095 -2.3483 0.7833 10 6 6.7997 -2.2995 0.8787 11 6 7.4883 -3.4347 1.2627 12 6 6.7616 -4.5943 1.5293 13 8 7.3984 -5.7328 1.9035 14 6 8.7289 -5.6520 2.1047 15 1 9.2529 -4.7328 1.8883 16 6 9.4246 -6.7490 2.5895 17 7 10.7230 -6.6700 2.7864 18 14 8.5170 -8.3365 2.9711 19 1 8.0516 -8.3141 4.3810 20 1 7.3472 -8.4678 2.0657 21 1 9.4306 -9.4898 2.7697 22 6 5.3770 -4.5690 1.4128 23 7 4.7512 -3.4689 1.0502 24 6 3.2674 -1.1454 0.3754 25 1 2.7279 2.0351 -0.6786 26 1 6.4265 0.0230 -0.0063 27 1 7.3310 -1.3850 0.6605 28 1 8.5648 -3.4250 1.3501 29 1 11.2090 -7.4362 3.1293 30 1 4.8077 -5.4627 1.6217 31 1 2.7313 -2.0363 0.6674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242569249.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:28 Heat of formation + Delta-G solvation = 55.303974 kcal Electronic energy + Delta-G solvation = -19532.447987 eV Core-core repulsion = 16191.704068 eV Total energy + Delta-G solvation = -3340.743919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 300.041 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29207 -39.36784 -37.59779 -36.96048 -36.29805 -32.89449 -32.43725 -31.75257 -31.09051 -28.79526 -25.79492 -24.58758 -23.48189 -22.56917 -21.45497 -19.07084 -18.21483 -17.65074 -16.59751 -16.28829 -15.66089 -15.29586 -14.87640 -14.59165 -14.48451 -14.29983 -13.85949 -13.37366 -13.32677 -13.12429 -13.01419 -12.79718 -12.72662 -12.47266 -11.95738 -11.90079 -11.52584 -11.50790 -11.18884 -11.09765 -10.50810 -9.95979 -9.57428 -9.31364 -9.11894 -9.06378 -8.96775 -7.57525 -6.73840 -4.37922 0.39347 0.72731 1.73254 1.78525 1.90004 2.48908 2.76746 3.05282 3.09578 3.21846 3.57829 3.62192 3.98675 4.22807 4.36109 4.51303 4.69111 4.78804 4.81819 4.98594 5.01998 5.27685 5.30853 5.54948 5.60274 5.74114 5.83164 5.96526 6.17296 6.20975 6.38775 6.65224 6.74893 7.02791 7.25933 7.41517 7.65688 8.39619 8.58318 9.14282 10.31750 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.003139 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.537619 B = 8918.032092 C =10160.532110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.261 3.739 3 C -0.017 4.017 4 C -0.079 4.079 5 C -0.031 4.031 6 Cl -0.063 7.063 7 C -0.085 4.085 8 C 0.015 3.985 9 C 0.035 3.965 10 C -0.094 4.094 11 C -0.190 4.190 12 C 0.117 3.883 13 O -0.192 6.192 14 C -0.392 4.392 15 H 0.110 0.890 16 C 0.068 3.932 17 N -0.861 5.861 18 Si 0.907 3.093 19 H -0.269 1.269 20 H -0.256 1.256 21 H -0.278 1.278 22 C 0.038 3.962 23 N -0.429 5.429 24 C -0.047 4.047 25 H 0.140 0.860 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.285 0.715 30 H 0.155 0.845 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 12.520 -5.036 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.054 4.054 3 C -0.020 4.020 4 C -0.100 4.100 5 C -0.058 4.058 6 Cl -0.034 7.034 7 C -0.105 4.105 8 C 0.013 3.987 9 C -0.099 4.099 10 C -0.114 4.114 11 C -0.215 4.215 12 C 0.060 3.940 13 O -0.093 6.093 14 C -0.467 4.467 15 H 0.128 0.872 16 C -0.138 4.138 17 N -0.496 5.496 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.180 1.180 21 H -0.204 1.204 22 C -0.126 4.126 23 N -0.139 5.139 24 C -0.068 4.068 25 H 0.158 0.842 26 H 0.162 0.838 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.096 0.904 30 H 0.173 0.827 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.334 12.272 -5.022 16.811 hybrid contribution 1.528 -0.487 0.232 1.620 sum -8.807 11.785 -4.791 15.472 Atomic orbital electron populations 1.81251 1.11916 1.07349 1.08608 1.25509 0.92410 0.93779 0.93710 1.15704 0.84457 0.95435 1.06445 1.20918 0.92094 0.97779 0.99220 1.20442 0.91815 0.89323 1.04236 1.98386 1.76665 1.37881 1.90447 1.21315 1.01174 0.90550 0.97444 1.18230 0.91939 0.91663 0.96821 1.18831 0.90043 0.91724 1.09277 1.21726 0.93740 0.98436 0.97458 1.21586 1.01765 0.92622 1.05557 1.20316 0.92897 0.86624 0.94205 1.83553 1.23952 1.28679 1.73091 1.20860 0.78357 1.02728 1.44777 0.87224 1.24553 0.95092 0.99270 0.94921 1.69631 1.06543 1.32607 1.40784 0.86140 0.80069 0.80652 0.79954 1.19454 1.17975 1.20381 1.21738 0.89049 0.96661 1.05201 1.67272 1.39627 0.98269 1.08702 1.21431 0.93531 0.96916 0.94944 0.84217 0.83834 0.85582 0.83634 0.90419 0.82732 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.62 18.54 41.84 0.78 -4.85 16 2 C 0.26 3.01 15.32 -22.47 -0.34 2.67 16 3 C -0.02 -0.17 5.73 -106.99 -0.61 -0.79 16 4 C -0.08 -0.71 9.52 -39.07 -0.37 -1.08 16 5 C -0.03 -0.30 6.31 -39.61 -0.25 -0.55 16 6 Cl -0.06 -0.56 28.94 -51.86 -1.50 -2.06 16 7 C -0.08 -0.89 9.18 -39.12 -0.36 -1.25 16 8 C 0.01 0.18 5.87 -104.96 -0.62 -0.43 16 9 C 0.04 0.54 6.72 -82.92 -0.56 -0.01 16 10 C -0.09 -1.44 9.44 -39.15 -0.37 -1.81 16 11 C -0.19 -3.50 9.25 -39.15 -0.36 -3.87 16 12 C 0.12 2.36 6.67 -38.87 -0.26 2.10 16 13 O -0.19 -4.45 8.59 0.21 0.00 -4.45 16 14 C -0.39 -9.86 9.95 30.88 0.31 -9.55 16 15 H 0.11 2.79 5.48 -52.49 -0.29 2.50 16 16 C 0.07 1.73 5.49 -17.52 -0.10 1.63 16 17 N -0.86 -22.67 13.96 55.48 0.77 -21.90 16 18 Si 0.91 19.56 28.62 -169.99 -4.86 14.69 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 22 C 0.04 0.68 11.14 -17.36 -0.19 0.49 16 23 N -0.43 -7.26 9.42 -9.61 -0.09 -7.35 16 24 C -0.05 -0.55 9.27 -38.81 -0.36 -0.91 16 25 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 26 H 0.14 1.33 6.19 -52.48 -0.32 1.01 16 27 H 0.13 1.52 6.20 -52.49 -0.33 1.20 16 28 H 0.15 2.76 5.75 -52.48 -0.30 2.46 16 29 H 0.29 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 31 H 0.15 1.79 7.53 -52.49 -0.40 1.40 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -26.38 304.85 -6.37 -32.75 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -1.62 Total: 1.93 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.44 Total: -13.37 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 1.46 Total: -34.09 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: 0.00 Total: -4.45 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.86 Total: 14.69 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.38 -6.37 -32.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569249.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.058 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds