Wall clock time and date at job start Tue Mar 31 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75364 * 94.71254 * 11 10 9 13 13 N 1.35313 * 106.17218 * 179.85517 * 12 11 10 14 14 C 1.46502 * 125.86779 * 180.12213 * 13 12 11 15 15 C 1.50694 * 109.47544 * 125.32174 * 14 13 12 16 16 N 1.31750 * 123.78298 * 269.69987 * 15 14 13 17 17 N 1.27566 * 118.28090 * 179.81579 * 16 15 14 18 18 S 1.56506 * 109.25596 * 0.43747 * 17 16 15 19 19 C 1.35488 * 123.78544 * 90.00154 * 15 14 13 20 20 Cl 1.73600 * 127.92839 * 359.96074 * 19 15 14 21 21 N 1.28710 * 108.26491 * 0.41269 * 13 12 11 22 22 N 1.28635 * 110.18134 * 359.73681 * 21 13 12 23 23 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 25 25 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 26 26 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 27 27 H 1.08001 * 126.90852 * 0.02562 * 12 11 10 28 28 H 1.09004 * 109.47088 * 245.32712 * 14 13 12 29 29 H 1.09003 * 109.47096 * 5.31471 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6206 -5.4755 -1.0812 13 7 -0.2300 -6.4152 -0.6074 14 6 -0.9696 -7.3887 -1.4145 15 6 -0.6805 -8.7801 -0.9133 16 7 0.3042 -9.5309 -1.3631 17 7 0.4558 -10.6937 -0.8607 18 16 -0.6492 -10.9368 0.2206 19 6 -1.4075 -9.4014 0.0464 20 17 -2.7874 -8.7893 0.9038 21 7 -0.2823 -6.3028 0.6737 22 7 0.4869 -5.3498 1.0674 23 1 -0.4849 0.8400 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 2.6847 -3.7145 -0.8895 26 1 2.6847 -3.7145 0.8905 27 1 0.8834 -5.2999 -2.1139 28 1 -2.0383 -7.1888 -1.3358 29 1 -0.6606 -7.3063 -2.4566 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330767903.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:16 Heat of formation + Delta-G solvation = 190.683562 kcal Electronic energy + Delta-G solvation = -18658.101125 eV Core-core repulsion = 15387.424064 eV Total energy + Delta-G solvation = -3270.677061 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.01948 -41.52209 -37.57997 -35.63765 -34.53061 -32.29754 -31.78151 -29.87477 -28.15091 -27.25093 -25.76477 -22.83491 -22.46247 -21.54000 -20.88750 -19.15913 -17.62136 -17.18924 -17.04952 -16.19105 -16.08828 -14.78654 -14.55453 -14.38111 -14.05194 -13.61574 -13.20372 -13.01382 -12.95901 -12.84906 -12.57680 -11.94209 -11.53260 -11.24798 -10.90118 -10.78879 -10.74411 -10.55127 -10.38584 -10.09152 -10.01319 -9.94278 -9.71721 -8.87000 -8.83134 -6.89559 -5.71949 -3.01402 -0.53034 0.05060 0.81803 1.25112 1.50093 1.81373 2.55292 2.91202 3.21782 3.47387 3.52509 3.54687 3.85639 4.33777 4.47819 4.64896 4.75390 4.81423 5.29771 5.48066 5.64524 5.80112 6.19671 6.41017 6.67543 6.69313 6.79492 7.01587 7.73439 8.45347 8.81689 9.57214 10.12904 10.49047 11.50822 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.035755 B = 0.002985 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.921556 B = 9376.960588 C = 9780.550985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.005 4.005 12 C -0.034 4.034 13 N -0.303 5.303 14 C 0.208 3.792 15 C 0.010 3.990 16 N -0.208 5.208 17 N -0.278 5.278 18 S 0.488 5.512 19 C -0.201 4.201 20 Cl 0.056 6.944 21 N -0.091 5.091 22 N -0.249 5.249 23 H 0.255 0.745 24 H 0.385 0.615 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.192 0.808 28 H 0.122 0.878 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -25.347 -3.379 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.142 4.142 12 C -0.184 4.184 13 N -0.097 5.097 14 C 0.082 3.918 15 C -0.138 4.138 16 N -0.075 5.075 17 N -0.258 5.258 18 S 0.623 5.377 19 C -0.367 4.367 20 Cl 0.084 6.916 21 N -0.070 5.070 22 N -0.117 5.117 23 H 0.065 0.935 24 H 0.219 0.781 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.209 0.791 28 H 0.140 0.860 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.783 -27.283 -2.170 27.973 hybrid contribution -0.424 2.691 -1.088 2.934 sum -6.207 -24.591 -3.258 25.571 Atomic orbital electron populations 1.69681 1.05166 1.25610 1.57613 1.24761 0.95532 0.97721 1.02967 0.86152 0.78655 0.83700 0.77445 1.21739 1.21817 1.20680 1.19235 0.91105 0.83823 1.42827 0.90888 1.42305 1.05979 0.99249 1.89525 1.18953 0.90022 0.81338 0.99318 1.22479 1.02501 1.00895 0.88327 1.23460 0.98081 0.94532 1.02282 1.47077 1.31518 1.24239 1.06877 1.20158 0.98148 0.78387 0.95074 1.22029 0.94017 0.99800 0.97977 1.71356 1.16267 0.97848 1.22029 1.78897 1.20766 1.13687 1.12454 1.81697 1.14083 1.09922 1.32022 1.28079 1.02205 1.03290 1.03106 1.98451 1.34326 1.85871 1.72913 1.78278 1.19649 1.16933 0.92149 1.75105 1.06350 1.03955 1.26270 0.93548 0.78094 0.94382 0.94338 0.79085 0.86009 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.06 55.49 0.72 -28.06 15 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 15 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 15 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 15 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 15 9 N -0.73 -19.09 5.59 -61.08 -0.34 -19.43 15 10 C 0.23 4.95 6.82 -5.20 -0.04 4.92 15 11 C 0.00 -0.09 6.61 -82.78 -0.55 -0.64 15 12 C -0.03 -0.51 11.50 -17.05 -0.20 -0.71 15 13 N -0.30 -4.26 3.43 -62.44 -0.21 -4.47 15 14 C 0.21 1.95 6.78 -5.20 -0.04 1.91 15 15 C 0.01 0.10 6.26 -83.61 -0.52 -0.42 15 16 N -0.21 -2.39 11.68 32.51 0.38 -2.01 15 17 N -0.28 -2.94 12.54 60.35 0.76 -2.18 15 18 S 0.49 3.58 23.40 -107.50 -2.52 1.06 15 19 C -0.20 -1.80 7.28 29.75 0.22 -1.58 15 20 Cl 0.06 0.48 28.83 -51.86 -1.50 -1.01 15 21 N -0.09 -1.58 12.92 60.35 0.78 -0.80 15 22 N -0.25 -5.08 12.41 33.29 0.41 -4.67 15 23 H 0.25 7.58 8.31 -40.82 -0.34 7.24 15 24 H 0.39 10.89 7.66 -40.82 -0.31 10.58 15 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 15 27 H 0.19 2.20 8.06 -52.49 -0.42 1.78 15 28 H 0.12 0.91 7.83 -51.93 -0.41 0.50 15 29 H 0.13 0.85 8.07 -51.93 -0.42 0.43 15 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -35.28 299.52 -5.34 -40.62 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -1.95 Total: 2.80 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.37 Total: -3.96 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 2.50 Total: -61.62 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.52 Total: 1.06 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.50 Total: -1.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.28 -5.34 -40.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330767903.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.301 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds