Wall clock time and date at job start Tue Mar 31 2020 07:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47408 * 355.57995 * 3 2 1 5 5 C 1.36875 * 119.99596 * 91.75674 * 4 3 2 6 6 H 1.07998 * 120.00002 * 170.62366 * 5 4 3 7 7 C 1.39006 * 120.00285 * 350.61990 * 5 4 3 8 8 N 1.31396 * 120.00303 * 341.94549 * 7 5 4 9 9 Si 1.86804 * 120.00348 * 161.94024 * 7 5 4 10 10 H 1.48503 * 109.46972 * 89.99814 * 9 7 5 11 11 H 1.48497 * 109.47548 * 210.00380 * 9 7 5 12 12 H 1.48502 * 109.46680 * 330.00382 * 9 7 5 13 13 C 1.34773 * 119.99899 * 271.75677 * 4 3 2 14 14 O 1.21740 * 119.99373 * 185.66737 * 13 4 3 15 15 C 1.46542 * 120.00375 * 5.66824 * 13 4 3 16 16 C 1.37995 * 126.24204 * 187.21566 * 15 13 4 17 17 C 1.39800 * 107.08557 * 179.97438 * 16 15 13 18 18 S 1.76202 * 126.06047 * 180.02562 * 17 16 15 19 19 O 1.42108 * 106.39971 * 203.54197 * 18 17 16 20 20 O 1.42098 * 106.40332 * 336.45640 * 18 17 16 21 21 F 1.60990 * 107.22108 * 90.00121 * 18 17 16 22 22 C 1.35487 * 107.88035 * 0.02562 * 17 16 15 23 23 N 1.35584 * 108.87997 * 359.73127 * 22 17 16 24 24 H 0.97003 * 125.68742 * 180.30717 * 23 22 17 25 25 H 4.40643 * 5.51425 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.46972 * 235.58162 * 3 2 1 27 27 H 1.08999 * 109.47054 * 115.58604 * 3 2 1 28 28 H 0.96996 * 120.00537 * 179.97438 * 8 7 5 29 29 H 1.08004 * 126.45760 * 0.03991 * 16 15 13 30 30 H 1.08004 * 125.55882 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3762 0.1064 5 6 3.3978 -2.0985 -1.0261 6 1 3.8984 -3.0528 -0.9540 7 6 3.0201 -1.6040 -2.2691 8 7 2.1201 -0.6502 -2.3510 9 14 3.7923 -2.2954 -3.8233 10 1 2.9833 -3.4416 -4.3103 11 1 3.8340 -1.2400 -4.8671 12 1 5.1733 -2.7543 -3.5279 13 6 3.3262 -1.9315 1.3195 14 8 3.8291 -3.0364 1.4106 15 6 2.9287 -1.2054 2.5287 16 6 3.1881 -1.5841 3.8301 17 6 2.6323 -0.6067 4.6608 18 16 2.6746 -0.5963 6.4223 19 8 1.5793 0.2043 6.8452 20 8 2.8523 -1.9466 6.8274 21 9 4.0089 0.1898 6.8623 22 6 2.0553 0.3312 3.8714 23 7 2.2333 -0.0180 2.5734 24 1 1.9212 0.4841 1.8044 25 1 -1.0498 -0.0005 -0.0002 26 1 3.0091 0.5817 0.8478 27 1 3.0092 0.4446 -0.9269 28 1 1.8569 -0.3049 -3.2184 29 1 3.7211 -2.4683 4.1470 30 1 1.5418 1.2154 4.2192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338820176.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:13 Heat of formation + Delta-G solvation = -24.053578 kcal Electronic energy + Delta-G solvation = -21869.396072 eV Core-core repulsion = 18096.485433 eV Total energy + Delta-G solvation = -3772.910639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.06065 -41.37764 -38.39897 -37.50239 -36.18551 -35.72161 -32.83040 -31.67654 -31.06156 -29.29753 -26.98971 -25.22741 -22.28128 -22.05722 -20.13972 -19.92421 -18.35905 -17.98888 -17.60251 -16.95546 -16.68078 -16.28789 -15.68802 -14.85802 -14.73860 -14.39155 -14.31704 -14.13926 -13.87645 -13.53468 -13.00614 -12.78925 -12.66468 -12.57349 -12.40752 -12.28539 -12.16358 -11.80516 -11.41337 -11.14931 -10.78107 -10.52108 -9.86051 -9.83145 -9.50731 -9.24363 -8.93694 -8.31662 -8.20000 -6.64352 -4.11633 0.02294 1.69807 2.09288 3.00427 3.03683 3.09611 3.14440 3.21793 3.35322 3.54233 3.57028 3.92960 4.02687 4.15056 4.59346 4.77886 4.88870 4.93696 5.24663 5.35767 5.65324 5.85177 5.97199 6.43022 6.54805 6.64365 6.81939 7.27194 7.34407 7.71039 8.10440 8.29901 8.79928 8.99329 9.52742 10.34311 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.004127 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.306808 B = 6782.982432 C = 7348.512211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.146 4.146 3 C 0.208 3.792 4 N -0.429 5.429 5 C -0.306 4.306 6 H 0.114 0.886 7 C 0.029 3.971 8 N -0.866 5.866 9 Si 0.933 3.067 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.266 1.266 13 C 0.503 3.497 14 O -0.565 6.565 15 C -0.004 4.004 16 C -0.055 4.055 17 C -0.769 4.769 18 S 2.699 3.301 19 O -0.942 6.942 20 O -0.933 6.933 21 F -0.480 7.480 22 C 0.123 3.877 23 N -0.526 5.526 24 H 0.431 0.569 25 H 0.207 0.793 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.273 0.727 29 H 0.163 0.837 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 7.732 8.801 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.147 4.147 3 C 0.084 3.916 4 N -0.145 5.145 5 C -0.433 4.433 6 H 0.132 0.868 7 C -0.175 4.175 8 N -0.505 5.505 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.448 6.448 15 C -0.117 4.117 16 C -0.080 4.080 17 C -0.866 4.866 18 S 2.790 3.210 19 O -0.941 6.941 20 O -0.931 6.931 21 F -0.479 7.479 22 C -0.022 4.022 23 N -0.129 5.129 24 H 0.282 0.718 25 H 0.224 0.776 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.180 0.820 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.528 7.321 9.130 11.714 hybrid contribution -0.361 0.129 -2.056 2.091 sum -0.889 7.450 7.074 10.312 Atomic orbital electron populations 1.24525 0.95543 1.00583 1.03998 1.23155 0.94407 0.99815 0.97364 1.18973 0.84245 0.85326 1.03036 1.43693 1.54909 1.10696 1.05250 1.19845 1.36145 1.04998 0.82271 0.86802 1.25373 0.95311 0.97036 0.99768 1.69989 1.26454 1.27960 1.26095 0.85816 0.79964 0.78532 0.79851 1.20120 1.20581 1.19053 1.16691 0.86514 0.86233 0.81312 1.90710 1.48813 1.19995 1.85296 1.21340 1.04464 0.89075 0.96860 1.20776 0.99804 0.98151 0.89234 1.30252 1.24613 1.08711 1.23004 1.02763 0.70846 0.73377 0.74059 1.93703 1.48871 1.70393 1.81133 1.93722 1.84938 1.33165 1.81291 1.93668 1.72797 1.88616 1.92827 1.21839 0.98385 0.98737 0.83250 1.44054 1.40772 1.19449 1.08675 0.71803 0.77649 0.92343 0.84441 0.91600 0.81959 0.79545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.05 19.25 29.55 0.57 -3.48 16 2 C -0.15 -2.84 9.40 -37.12 -0.35 -3.19 16 3 C 0.21 4.14 4.71 -6.83 -0.03 4.11 16 4 N -0.43 -10.15 2.58 -119.47 -0.31 -10.46 16 5 C -0.31 -7.83 9.48 -15.02 -0.14 -7.97 16 6 H 0.11 3.08 7.25 -52.49 -0.38 2.70 16 7 C 0.03 0.69 5.07 -17.45 -0.09 0.60 16 8 N -0.87 -20.45 8.89 55.50 0.49 -19.96 16 9 Si 0.93 19.03 29.59 -169.99 -5.03 14.00 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.50 11.95 7.56 -12.92 -0.10 11.86 16 14 O -0.57 -15.19 16.49 5.15 0.08 -15.10 16 15 C 0.00 -0.08 6.62 -81.99 -0.54 -0.62 16 16 C -0.05 -0.95 10.45 -39.09 -0.41 -1.36 16 17 C -0.77 -10.68 6.23 -39.98 -0.25 -10.93 16 18 S 2.70 31.79 7.00 -107.50 -0.75 31.03 16 19 O -0.94 -12.33 17.87 -57.17 -1.02 -13.35 16 20 O -0.93 -13.80 17.89 -57.17 -1.02 -14.82 16 21 F -0.48 -5.24 17.91 2.25 0.04 -5.20 16 22 C 0.12 1.58 11.64 -16.88 -0.20 1.38 16 23 N -0.53 -8.21 4.83 -9.37 -0.05 -8.26 16 24 H 0.43 6.38 3.59 -40.82 -0.15 6.24 16 25 H 0.21 2.89 7.80 -54.10 -0.42 2.47 16 26 H 0.06 0.97 5.18 -51.93 -0.27 0.70 16 27 H 0.14 2.90 5.99 -51.93 -0.31 2.59 16 28 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 29 H 0.16 2.74 8.06 -52.48 -0.42 2.31 16 30 H 0.19 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 289.03 15.07 4.36 4.36 Total: -1.00 -32.69 289.03 -6.25 -38.95 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -1.51 Total: 8.41 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.54 Total: -9.59 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.14 Total: -38.68 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.96 Total: -43.27 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.04 Total: -5.20 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: 31.79 SS G_CDS: -0.75 Total: 31.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.69 -6.25 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338820176.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.893 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds