Wall clock time and date at job start Tue Mar 31 2020 07:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47277 * 2 1 4 4 C 1.50698 * 109.47088 * 120.00027 * 2 1 3 5 5 H 1.08000 * 120.00078 * 120.00134 * 4 2 1 6 6 C 1.37882 * 120.00327 * 299.99922 * 4 2 1 7 7 N 1.31518 * 119.99277 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47053 * 119.99803 * 8 6 4 11 11 H 1.48500 * 109.46756 * 239.99676 * 8 6 4 12 12 N 1.46499 * 109.46773 * 239.99693 * 2 1 3 13 13 C 1.38610 * 119.99549 * 85.00295 * 12 2 1 14 14 N 1.29645 * 125.25855 * 180.02562 * 13 12 2 15 15 C 1.33335 * 116.85075 * 179.75300 * 14 13 12 16 16 C 1.48328 * 122.37093 * 180.26354 * 15 14 13 17 17 N 1.33733 * 126.31557 * 179.89604 * 16 15 14 18 18 N 1.28560 * 109.84599 * 179.81800 * 17 16 15 19 19 N 1.28918 * 109.73714 * 0.44512 * 18 17 16 20 20 H 0.96996 * 126.42510 * 179.68906 * 19 18 17 21 21 N 1.32040 * 126.31810 * 0.20029 * 16 15 14 22 22 C 1.34457 * 115.25911 * 0.45576 * 15 14 13 23 23 Cl 1.73599 * 125.85299 * 179.85130 * 22 15 14 24 24 S 1.76075 * 125.26614 * 0.02562 * 13 12 2 25 25 H 1.09009 * 109.46881 * 300.00205 * 1 2 3 26 26 H 1.08994 * 109.47328 * 59.99786 * 1 2 3 27 27 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99217 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00344 * 264.99998 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1196 4.0080 9 1 3.1474 -2.2864 3.6038 10 1 3.1474 -0.1858 4.8161 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1506 0.0008 -2.3901 14 7 2.5707 -0.5071 -3.5065 15 6 2.6276 0.3120 -4.5571 16 6 3.0840 -0.1412 -5.8937 17 7 3.1701 0.6088 -6.9975 18 7 3.6063 -0.1025 -7.9755 19 7 3.8107 -1.3115 -7.5774 20 1 4.1349 -2.0488 -8.1178 21 7 3.4748 -1.3610 -6.2145 22 6 2.2459 1.5790 -4.3182 23 17 2.2156 2.8681 -5.4804 24 16 1.7743 1.7048 -2.6252 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7096 1.1618 3.4844 29 1 2.2490 -1.6318 -1.1526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:19 Heat of formation + Delta-G solvation = 165.512770 kcal Electronic energy + Delta-G solvation = -18778.853137 eV Core-core repulsion = 15507.084589 eV Total energy + Delta-G solvation = -3271.768548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.21249 -39.23122 -36.64381 -36.05356 -33.75979 -33.01541 -32.59448 -29.93517 -28.09919 -25.56264 -24.97758 -24.41936 -22.47028 -21.07304 -20.15130 -18.69210 -17.93527 -17.02577 -16.59700 -15.88361 -15.22004 -15.09728 -14.64726 -14.13594 -14.04272 -13.45148 -12.89021 -12.55116 -12.26077 -11.93071 -11.81487 -11.43330 -11.23876 -11.07790 -11.05114 -10.94632 -10.83823 -10.56554 -10.40396 -10.31526 -9.55224 -9.39570 -9.27079 -8.84428 -8.69640 -7.17935 -6.36358 -4.46251 0.58699 1.05969 1.13448 1.71499 2.11552 2.13915 2.51260 3.13139 3.20710 3.23344 3.30817 3.32327 3.95007 4.18390 4.30574 4.97812 5.21539 5.26192 5.56140 5.85880 6.37548 6.42293 6.62512 6.68480 6.95748 7.31155 7.44858 7.55489 7.80216 8.02964 8.13511 8.22923 8.60288 9.22080 10.69874 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.003770 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.759350 B = 7424.546900 C = 8198.101123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.068 0.932 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.907 3.093 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.651 5.651 13 C 0.373 3.627 14 N -0.548 5.548 15 C 0.195 3.805 16 C 0.278 3.722 17 N -0.275 5.275 18 N 0.002 4.998 19 N -0.304 5.304 20 H 0.468 0.532 21 N -0.257 5.257 22 C -0.205 4.205 23 Cl 0.011 6.989 24 S 0.136 5.864 25 H 0.099 0.901 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.268 0.732 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -0.240 -14.162 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.574 4.574 5 H 0.086 0.914 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.734 3.266 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.285 5.285 13 C -0.002 4.002 14 N -0.277 5.277 15 C 0.058 3.942 16 C -0.006 4.006 17 N -0.154 5.154 18 N 0.006 4.994 19 N -0.151 5.151 20 H 0.323 0.677 21 N -0.101 5.101 22 C -0.361 4.361 23 Cl 0.039 6.961 24 S 0.383 5.617 25 H 0.118 0.882 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.095 0.339 -13.772 13.934 hybrid contribution 0.777 -1.578 0.071 1.760 sum 2.871 -1.239 -13.701 14.053 Atomic orbital electron populations 1.22256 0.97497 1.00503 1.01385 1.19165 0.91630 0.93324 0.79724 0.93552 1.21096 1.33074 1.13783 0.89473 0.91377 1.24872 0.94481 0.94902 0.99210 1.69866 1.35411 1.22210 1.24398 0.86285 0.78715 0.79575 0.81987 1.19563 1.20663 1.20673 1.45365 1.65508 1.13006 1.04610 1.24230 0.93774 0.92079 0.90118 1.66692 1.29643 1.33966 0.97395 1.16245 1.02135 0.87465 0.88352 1.22538 0.97557 0.87102 0.93419 1.75663 1.18113 1.25967 0.95645 1.78346 1.08747 0.90728 1.21582 1.51113 1.46210 1.10226 1.07583 0.67745 1.79152 1.19975 1.20037 0.90948 1.25951 1.19337 0.93874 0.96944 1.98343 1.97195 1.45892 1.54673 1.85465 1.67063 1.09083 1.00098 0.88229 0.96395 0.94354 0.92216 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.27 37.16 0.34 -3.02 15 2 C 0.26 5.79 2.54 -69.08 -0.18 5.62 15 3 H 0.05 1.10 7.30 -51.93 -0.38 0.72 15 4 C -0.54 -12.94 8.73 -34.44 -0.30 -13.24 15 5 H 0.07 1.62 7.74 -52.49 -0.41 1.21 15 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.88 -22.43 11.32 55.43 0.63 -21.81 15 8 Si 0.91 19.36 29.54 -169.99 -5.02 14.34 15 9 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 12 N -0.65 -12.69 5.22 -55.55 -0.29 -12.98 15 13 C 0.37 7.01 8.41 -87.71 -0.74 6.27 15 14 N -0.55 -10.34 10.63 -10.35 -0.11 -10.45 15 15 C 0.19 3.46 6.69 -84.40 -0.56 2.90 15 16 C 0.28 4.59 8.07 -156.42 -1.26 3.32 15 17 N -0.27 -4.20 10.52 32.11 0.34 -3.87 15 18 N 0.00 0.03 13.42 60.35 0.81 0.84 15 19 N -0.30 -3.24 8.44 60.35 0.51 -2.73 15 20 H 0.47 2.56 8.96 -331.92 -2.98 -0.41 15 21 N -0.26 -3.86 12.91 32.13 0.41 -3.45 15 22 C -0.21 -3.44 7.17 29.40 0.21 -3.22 15 23 Cl 0.01 0.16 27.41 -51.86 -1.42 -1.26 15 24 S 0.14 2.33 22.11 -107.50 -2.38 -0.05 15 25 H 0.10 2.34 6.07 -51.92 -0.32 2.02 15 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 28 H 0.27 6.49 8.31 -40.82 -0.34 6.15 15 29 H 0.41 7.58 8.66 -40.82 -0.35 7.23 15 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -27.01 292.36 -9.10 -36.11 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.41 Total: 0.66 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.58 Total: 0.23 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 2.30 Total: -54.44 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.38 Total: -0.05 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.42 Total: -1.26 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.01 -9.10 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.626 kcal (2) G-P(sol) polarization free energy of solvation -27.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds