Wall clock time and date at job start Tue Mar 31 2020 07:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.46911 * 29.99792 * 3 2 1 6 6 H 1.48496 * 109.47593 * 149.99861 * 3 2 1 7 7 C 1.37882 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99712 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.46919 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99767 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46715 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.47396 * 65.00188 * 12 11 10 14 14 C 1.34819 * 117.00253 * 179.97438 * 13 12 11 15 15 O 1.21548 * 119.99859 * 359.97438 * 14 13 12 16 16 C 1.47042 * 120.00283 * 179.97438 * 14 13 12 17 17 C 1.36696 * 125.16306 * 180.02562 * 16 14 13 18 18 C 1.36744 * 114.74373 * 180.02562 * 17 16 14 19 19 C 1.36695 * 114.74259 * 359.97438 * 18 17 16 20 20 C 1.47041 * 125.16455 * 179.97438 * 19 18 17 21 21 O 1.21544 * 119.99964 * 0.02713 * 20 19 18 22 22 O 1.34819 * 120.00328 * 180.02562 * 20 19 18 23 23 S 1.75838 * 125.15913 * 0.02562 * 16 14 13 24 24 H 0.97000 * 120.00005 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47303 * 60.00232 * 9 7 2 26 26 H 1.09002 * 109.47306 * 299.99813 * 9 7 2 27 27 H 1.09001 * 109.47262 * 60.00070 * 11 10 9 28 28 H 1.09003 * 109.47107 * 299.99876 * 11 10 9 29 29 H 1.08997 * 109.47413 * 304.99758 * 12 11 10 30 30 H 1.09000 * 109.47150 * 184.99840 * 12 11 10 31 31 H 1.08005 * 122.62895 * 359.97438 * 17 16 14 32 32 H 1.07998 * 122.62896 * 180.02562 * 18 17 16 33 33 H 0.96700 * 116.99875 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5414 -0.0010 11 6 5.4125 -2.6541 -0.0009 12 6 5.8069 -4.1324 -0.0015 13 8 5.3728 -4.7488 -1.2424 14 6 5.6458 -6.0592 -1.4032 15 8 6.2310 -6.6697 -0.5301 16 6 5.2355 -6.7500 -2.6347 17 6 5.4567 -8.0711 -2.9073 18 6 4.9844 -8.4923 -4.1195 19 6 4.3675 -7.5238 -4.8611 20 6 3.7787 -7.7238 -6.1935 21 8 3.8190 -8.8198 -6.7175 22 8 3.1940 -6.6916 -6.8341 23 16 4.3859 -6.0020 -3.9803 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6800 -0.8911 27 1 5.8152 -2.1705 0.8890 28 1 5.8153 -2.1707 -0.8910 29 1 5.3311 -4.6357 0.8401 30 1 6.8897 -4.2195 0.0881 31 1 5.9654 -8.7304 -2.2196 32 1 5.0898 -9.5106 -4.4637 33 1 2.8213 -6.8716 -7.7080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068230.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:23 Heat of formation + Delta-G solvation = -181.992965 kcal Electronic energy + Delta-G solvation = -20634.813041 eV Core-core repulsion = 16946.221190 eV Total energy + Delta-G solvation = -3688.591851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.059 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55068 -40.39945 -38.01516 -37.18129 -36.41824 -36.13957 -32.74375 -31.17962 -30.17465 -27.73946 -26.70833 -23.48420 -22.66000 -21.96203 -21.71633 -19.45788 -19.28969 -18.27269 -17.45504 -16.97654 -16.66439 -16.18355 -16.07749 -16.04226 -15.47728 -14.90531 -14.59295 -14.21092 -13.63788 -13.57803 -13.42590 -12.93462 -12.81610 -12.60581 -12.48160 -11.98052 -11.81849 -11.47210 -11.23694 -11.08319 -10.95987 -10.78058 -10.67162 -10.62129 -9.91617 -9.43302 -9.25362 -9.02080 -8.96856 -8.55732 -6.15651 -4.15361 -0.46531 0.91181 1.38552 1.45644 2.35369 2.41800 2.51831 2.66676 3.21201 3.28373 3.28798 4.30937 4.37205 4.51597 4.65637 4.75316 4.87447 5.01962 5.15341 5.27725 5.43661 5.53560 5.60298 5.70582 5.76409 5.86014 6.00189 6.27829 6.49992 6.91450 7.41046 7.51802 7.52749 7.89421 8.58392 8.95536 9.42776 10.97286 Molecular weight = 300.06amu Principal moments of inertia in cm(-1) A = 0.015421 B = 0.003356 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.296193 B = 8341.544273 C = 9769.961249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.376 6.376 11 C 0.056 3.944 12 C 0.077 3.923 13 O -0.337 6.337 14 C 0.536 3.464 15 O -0.495 6.495 16 C -0.222 4.222 17 C -0.072 4.072 18 C -0.062 4.062 19 C -0.247 4.247 20 C 0.560 3.440 21 O -0.502 6.502 22 O -0.508 6.508 23 S 0.320 5.680 24 H 0.267 0.733 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.902 -13.548 -10.282 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.295 6.295 11 C -0.021 4.021 12 C 0.003 3.997 13 O -0.253 6.253 14 C 0.378 3.622 15 O -0.385 6.385 16 C -0.343 4.343 17 C -0.105 4.105 18 C -0.096 4.096 19 C -0.368 4.368 20 C 0.402 3.598 21 O -0.392 6.392 22 O -0.320 6.320 23 S 0.593 5.407 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 12.382 -12.377 -10.065 20.194 hybrid contribution 0.841 -0.385 -0.115 0.932 sum 13.223 -12.761 -10.180 21.008 Atomic orbital electron populations 1.69871 1.06067 1.27152 1.50103 1.24766 0.94808 0.98743 0.94583 0.86851 0.80315 0.83759 0.78813 1.19858 1.20747 1.19121 1.20869 0.88151 0.95397 1.51474 0.89900 1.20644 0.96365 0.79129 0.94511 1.87982 1.16525 1.29896 1.95104 1.22419 0.86288 0.92547 1.00874 1.23292 0.99421 0.93217 0.83744 1.86654 1.73602 1.22820 1.42205 1.19674 0.76272 0.81212 0.84996 1.90871 1.38582 1.67107 1.41918 1.24187 1.11461 0.98770 0.99870 1.20502 0.99724 0.93362 0.96950 1.20484 0.95924 1.00669 0.92479 1.24023 1.12647 1.01388 0.98697 1.19364 0.74743 0.81691 0.83969 1.90939 1.55793 1.25789 1.66631 1.84593 1.69559 1.40697 1.37159 1.85025 1.46774 1.05162 1.03746 0.92298 0.97800 0.98120 0.91467 0.92894 0.89878 0.89852 0.81846 0.81999 0.71857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16 8 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.17 4.15 4.76 36.01 0.17 4.32 16 10 O -0.38 -8.46 10.30 -38.80 -0.40 -8.86 16 11 C 0.06 0.91 6.33 37.16 0.24 1.15 16 12 C 0.08 1.09 5.86 37.16 0.22 1.31 16 13 O -0.34 -5.24 10.04 -43.60 -0.44 -5.67 16 14 C 0.54 7.67 7.95 34.30 0.27 7.95 16 15 O -0.49 -7.72 16.61 -19.30 -0.32 -8.04 16 16 C -0.22 -2.65 6.46 -36.57 -0.24 -2.89 16 17 C -0.07 -0.69 9.88 -40.68 -0.40 -1.10 16 18 C -0.06 -0.55 9.88 -40.68 -0.40 -0.95 16 19 C -0.25 -2.51 6.46 -36.57 -0.24 -2.74 16 20 C 0.56 5.64 8.32 34.30 0.29 5.92 16 21 O -0.50 -6.09 17.60 -19.30 -0.34 -6.43 16 22 O -0.51 -3.93 13.28 -40.82 -0.54 -4.47 16 23 S 0.32 3.57 22.95 -107.50 -2.47 1.10 16 24 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 26 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.16 1.32 8.04 -52.48 -0.42 0.89 16 32 H 0.16 1.16 8.04 -52.49 -0.42 0.73 16 33 H 0.42 1.20 9.11 45.56 0.42 1.62 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -35.37 323.19 -6.54 -41.91 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -2.48 Total: -3.59 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.54 Total: -0.61 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -2.04 Total: -33.48 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.47 Total: 1.10 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.37 -6.54 -41.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068230.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.084 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds