Wall clock time and date at job start Tue Mar 31 2020 07:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99965 * 2 1 4 4 H 1.48509 * 109.46845 * 269.99747 * 3 2 1 5 5 H 1.48499 * 109.47198 * 29.99532 * 3 2 1 6 6 H 1.48500 * 109.47257 * 150.00240 * 3 2 1 7 7 C 1.37882 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00048 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47424 * 180.02562 * 9 7 2 11 11 C 1.81394 * 103.00154 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47226 * 54.99972 * 11 10 9 13 13 C 1.53005 * 109.47175 * 174.99813 * 11 10 9 14 14 C 1.50697 * 109.46832 * 294.99886 * 13 11 10 15 15 C 1.38247 * 119.98676 * 90.00295 * 14 13 11 16 16 C 1.38216 * 120.01497 * 179.97438 * 15 14 13 17 17 C 1.38357 * 119.98603 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.01134 * 180.02562 * 17 16 15 19 19 C 1.38347 * 119.97107 * 0.28224 * 17 16 15 20 20 C 1.38219 * 119.98927 * 359.42057 * 19 17 16 21 21 C 1.50694 * 109.47206 * 294.99725 * 11 10 9 22 22 O 1.20833 * 120.00310 * 110.00098 * 21 11 10 23 23 O 1.34234 * 120.00284 * 290.00290 * 21 11 10 24 24 H 0.96991 * 119.99831 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46999 * 59.99822 * 9 7 2 26 26 H 1.09001 * 109.47093 * 300.00496 * 9 7 2 27 27 H 1.08996 * 109.47247 * 174.99593 * 13 11 10 28 28 H 1.09004 * 109.46969 * 54.99830 * 13 11 10 29 29 H 1.08003 * 119.99321 * 359.97223 * 15 14 13 30 30 H 1.08003 * 120.00776 * 179.97438 * 16 15 14 31 31 H 1.08000 * 120.00645 * 179.69150 * 19 17 16 32 32 H 1.07997 * 119.99421 * 180.29781 * 20 19 17 33 33 H 0.96693 * 117.00149 * 180.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2512 -2.4992 0.0017 10 16 2.4299 -3.8780 0.0029 11 6 1.3517 -5.3367 0.0034 12 1 0.6620 -5.2790 -0.8387 13 6 2.2042 -6.6011 -0.1213 14 6 2.8910 -6.6135 -1.4626 15 6 4.1392 -6.0366 -1.6050 16 6 4.7700 -6.0481 -2.8348 17 6 4.1516 -6.6367 -3.9236 18 17 4.9434 -6.6521 -5.4684 19 6 2.8997 -7.2082 -3.7819 20 6 2.2726 -7.2015 -2.5501 21 6 0.5699 -5.3830 1.2909 22 8 -0.6201 -5.1734 1.2830 23 8 1.1954 -5.6570 2.4465 24 1 -0.4849 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 1.5658 -7.4800 -0.0318 28 1 2.9531 -6.6139 0.6706 29 1 4.6217 -5.5768 -0.7551 30 1 5.7449 -5.5970 -2.9461 31 1 2.4143 -7.6634 -4.6325 32 1 1.2974 -7.6519 -2.4383 33 1 0.6519 -5.6760 3.2461 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:33 Heat of formation + Delta-G solvation = -90.895294 kcal Electronic energy + Delta-G solvation = -19055.373228 eV Core-core repulsion = 15811.440833 eV Total energy + Delta-G solvation = -3243.932395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.07301 -39.33244 -36.59485 -35.87369 -34.16799 -33.19933 -31.06175 -29.86835 -28.58956 -25.17683 -23.12851 -22.85016 -21.64076 -21.03296 -17.90814 -17.24708 -16.78250 -16.35112 -15.98494 -15.52562 -15.22301 -14.95417 -14.38276 -13.91574 -13.67155 -13.49695 -13.31351 -12.95334 -12.64390 -12.35771 -12.19148 -11.90022 -11.49955 -11.38395 -11.34948 -11.23129 -10.92374 -10.82691 -10.69378 -10.55488 -9.98102 -9.63253 -9.10482 -8.94113 -8.66376 -8.57415 -6.91817 -6.22887 -4.29311 1.10954 1.32381 1.86075 2.10840 2.71953 3.16903 3.23765 3.29590 3.33884 3.57403 3.73436 4.31419 4.62500 4.72208 4.88048 4.89351 5.13748 5.14707 5.22110 5.33378 5.53220 5.62412 5.70178 5.91625 6.00053 6.19459 6.25607 6.56017 6.66507 6.80738 6.99800 7.04664 7.68713 7.92767 8.08060 8.72194 9.34426 10.88048 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.004750 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.614564 B = 5892.787754 C = 7678.473907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.081 3.919 10 S -0.236 6.236 11 C -0.062 4.062 12 H 0.121 0.879 13 C -0.055 4.055 14 C -0.075 4.075 15 C -0.072 4.072 16 C -0.109 4.109 17 C -0.035 4.035 18 Cl -0.080 7.080 19 C -0.114 4.114 20 C -0.103 4.103 21 C 0.490 3.510 22 O -0.512 6.512 23 O -0.504 6.504 24 H 0.267 0.733 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.476 -16.369 -3.088 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.086 0.914 9 C -0.066 4.066 10 S -0.008 6.008 11 C -0.191 4.191 12 H 0.139 0.861 13 C -0.093 4.093 14 C -0.075 4.075 15 C -0.091 4.091 16 C -0.128 4.128 17 C -0.061 4.061 18 Cl -0.052 7.052 19 C -0.133 4.133 20 C -0.121 4.121 21 C 0.329 3.671 22 O -0.401 6.401 23 O -0.315 6.315 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 7.418 -16.157 -3.600 18.139 hybrid contribution -1.425 1.070 0.285 1.805 sum 5.993 -15.086 -3.315 16.568 Atomic orbital electron populations 1.69967 1.06172 1.27470 1.48970 1.24972 0.94962 0.99305 0.94488 0.86343 0.79715 0.82139 0.78419 1.20259 1.20921 1.19489 1.20585 0.93362 0.88483 1.53109 0.91376 1.21227 0.93799 0.91058 1.00524 1.86806 1.17869 0.99005 1.97096 1.23066 1.01032 1.00865 0.94091 0.86104 1.20370 0.98774 0.94657 0.95503 1.19753 0.94846 0.97867 0.95038 1.21072 0.94279 0.96387 0.97351 1.21036 1.00769 0.99429 0.91558 1.20918 0.94933 1.03382 0.86883 1.98357 1.80256 1.97480 1.29077 1.20939 0.93608 1.00544 0.98210 1.20978 0.99763 0.99652 0.91707 1.23251 0.86047 0.71974 0.85829 1.90749 1.16649 1.45343 1.87342 1.84516 1.46317 1.82745 1.17904 0.92370 0.94261 0.94596 0.89710 0.88525 0.84478 0.84970 0.85218 0.85268 0.73514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.36 9.13 -34.44 -0.31 -14.67 16 8 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 9 C 0.08 2.09 5.48 36.00 0.20 2.28 16 10 S -0.24 -4.73 19.27 -107.50 -2.07 -6.80 16 11 C -0.06 -0.99 2.68 -27.88 -0.07 -1.06 16 12 H 0.12 2.00 8.13 -51.92 -0.42 1.58 16 13 C -0.06 -0.67 4.63 -27.88 -0.13 -0.79 16 14 C -0.07 -0.92 4.85 -104.62 -0.51 -1.43 16 15 C -0.07 -0.92 8.56 -39.59 -0.34 -1.26 16 16 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 17 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 18 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 19 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 20 C -0.10 -1.15 9.70 -39.59 -0.38 -1.54 16 21 C 0.49 8.27 6.74 36.00 0.24 8.51 16 22 O -0.51 -10.33 17.85 -18.76 -0.33 -10.67 16 23 O -0.50 -6.84 13.12 -39.27 -0.51 -7.35 16 24 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.04 1.08 8.14 -51.92 -0.42 0.65 16 26 H 0.04 1.00 8.00 -51.92 -0.42 0.59 16 27 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 29 H 0.14 1.71 7.77 -52.48 -0.41 1.30 16 30 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.41 3.73 9.10 45.56 0.41 4.15 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -32.04 324.01 -9.16 -41.20 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.90 Total: 2.50 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.43 Total: -12.23 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.85 Total: -18.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.07 Total: -6.80 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.04 -9.16 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.697 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds