Wall clock time and date at job start Tue Mar 31 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48506 * 109.46996 * 269.99941 * 3 2 1 5 5 H 1.48498 * 109.47188 * 29.99932 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99838 * 3 2 1 7 7 C 1.38800 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.81003 * 100.00036 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47027 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46625 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46625 * 180.02562 * 12 11 10 14 14 C 1.34879 * 116.99964 * 180.02562 * 13 12 11 15 15 O 1.21613 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.46596 * 120.00313 * 180.26976 * 14 13 12 17 17 C 1.36130 * 125.65560 * 179.72216 * 16 14 13 18 18 C 1.41732 * 106.61773 * 180.02562 * 17 16 14 19 19 C 1.47354 * 126.77932 * 180.02562 * 18 17 16 20 20 O 1.21520 * 120.00088 * 359.97438 * 19 18 17 21 21 O 1.34748 * 119.99749 * 180.02562 * 19 18 17 22 22 C 1.37928 * 106.43943 * 0.02562 * 18 17 16 23 23 O 1.33455 * 108.34240 * 359.73603 * 22 18 17 24 24 H 0.97003 * 119.99911 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47265 * 59.99562 * 10 9 7 26 26 H 1.09004 * 109.46666 * 299.99444 * 10 9 7 27 27 H 1.08992 * 109.47275 * 60.00080 * 11 10 9 28 28 H 1.08996 * 109.47082 * 299.99548 * 11 10 9 29 29 H 1.08998 * 109.47391 * 59.99720 * 12 11 10 30 30 H 1.09004 * 109.46942 * 299.99357 * 12 11 10 31 31 H 1.08005 * 126.69272 * 359.97438 * 17 16 14 32 32 H 0.96703 * 117.00216 * 179.97438 * 21 19 18 33 33 H 1.08000 * 125.82429 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5957 -3.2364 0.0010 12 6 5.8612 -4.7432 0.0015 13 8 7.2934 -4.9821 0.0032 14 6 7.6997 -6.2683 0.0032 15 8 6.8785 -7.1653 0.0023 16 6 9.1310 -6.5850 0.0109 17 6 9.6668 -7.8364 0.0171 18 6 11.0748 -7.6744 0.0238 19 6 12.0862 -8.7461 0.0315 20 8 11.7378 -9.9103 0.0329 21 8 13.3972 -8.4351 0.0379 22 6 11.3114 -6.3156 0.0219 23 8 10.1356 -5.6845 0.0086 24 1 -0.4850 0.8401 -0.0004 25 1 3.6438 -3.4315 -0.8903 26 1 3.6432 -3.4318 0.8897 27 1 6.0379 -2.7897 0.8915 28 1 6.0393 -2.7892 -0.8885 29 1 5.4189 -5.1904 -0.8887 30 1 5.4176 -5.1900 0.8913 31 1 9.1247 -8.7705 0.0177 32 1 14.0233 -9.1721 0.0431 33 1 12.2825 -5.8430 0.0261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:35 Heat of formation + Delta-G solvation = -170.751471 kcal Electronic energy + Delta-G solvation = -20071.049934 eV Core-core repulsion = 16382.945551 eV Total energy + Delta-G solvation = -3688.104383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 300.059 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.51010 -40.53875 -40.35569 -37.03321 -36.62945 -33.97931 -33.68802 -32.47844 -31.10685 -27.04888 -25.70813 -25.29534 -24.21507 -21.69079 -21.54419 -21.09875 -19.17319 -18.32580 -17.62333 -17.39930 -17.34363 -16.67687 -16.52785 -16.17627 -15.91855 -15.03779 -14.74632 -14.59160 -14.11331 -13.84848 -13.38369 -13.31132 -13.00414 -12.86530 -12.57504 -12.19312 -11.61489 -11.33364 -11.33090 -11.23792 -11.14201 -11.03169 -10.83409 -10.47536 -10.33411 -9.85378 -9.53605 -9.04705 -8.64470 -7.01036 -6.32043 -4.05752 0.22475 0.69189 1.73943 2.16238 2.26474 2.52236 2.63122 2.98667 3.27345 3.41976 3.52079 3.84426 4.00528 4.27642 4.43140 4.70451 4.74047 4.95229 4.96379 5.01450 5.06769 5.08067 5.30203 5.40460 5.61279 5.61688 5.86625 5.91641 6.00697 6.14960 6.27677 6.49680 7.30344 7.31220 7.91466 8.40772 9.13198 10.77283 Molecular weight = 300.06amu Principal moments of inertia in cm(-1) A = 0.050748 B = 0.002055 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.615234 B =13619.561265 C =14145.389527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.089 0.911 9 S -0.205 6.205 10 C -0.085 4.085 11 C -0.102 4.102 12 C 0.072 3.928 13 O -0.342 6.342 14 C 0.551 3.449 15 O -0.480 6.480 16 C -0.056 4.056 17 C -0.054 4.054 18 C -0.241 4.241 19 C 0.559 3.441 20 O -0.506 6.506 21 O -0.513 6.513 22 C 0.094 3.906 23 O -0.132 6.132 24 H 0.271 0.729 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.420 0.580 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.295 -14.148 0.137 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.233 4.233 11 C -0.140 4.140 12 C -0.002 4.002 13 O -0.258 6.258 14 C 0.394 3.606 15 O -0.369 6.369 16 C -0.106 4.106 17 C -0.074 4.074 18 C -0.243 4.243 19 C 0.402 3.598 20 O -0.395 6.395 21 O -0.326 6.326 22 C 0.020 3.980 23 O -0.024 6.024 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.196 0.804 32 H 0.280 0.720 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 27.068 -13.065 0.136 30.057 hybrid contribution -0.385 -0.940 -0.032 1.016 sum 26.683 -14.005 0.103 30.135 Atomic orbital electron populations 1.69936 1.05914 1.27779 1.47991 1.24795 0.94528 0.99039 0.93290 0.86670 0.81725 0.83202 0.79746 1.19314 1.20036 1.16151 1.22118 0.86926 0.97527 1.58718 0.89271 1.84177 1.11861 1.04153 1.97562 1.22949 0.95789 1.00237 1.04340 1.21345 0.96088 0.91941 1.04627 1.23394 0.75054 0.98455 1.03334 1.86621 1.29638 1.26410 1.83174 1.19035 0.85526 0.82194 0.73817 1.90993 1.52092 1.47969 1.45829 1.20678 0.86420 0.87250 1.16205 1.21843 0.91705 0.97996 0.95822 1.19599 0.92824 0.92601 1.19312 1.19518 0.81120 0.86962 0.72156 1.90952 1.81791 1.20762 1.46018 1.84508 1.17137 1.44959 1.86023 1.25543 0.89046 0.90775 0.92686 1.84113 1.13981 1.36410 1.67880 0.91905 0.90906 0.90872 0.90088 0.90097 0.90439 0.90443 0.80379 0.72050 0.74951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 2 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 3 Si 0.86 21.18 27.74 -169.99 -4.71 16.47 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 7 C -0.51 -14.43 10.04 30.94 0.31 -14.12 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.28 16 9 S -0.21 -4.86 19.41 -107.50 -2.09 -6.95 16 10 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 12 C 0.07 0.94 5.48 37.16 0.20 1.14 16 13 O -0.34 -4.40 10.23 -42.59 -0.44 -4.84 16 14 C 0.55 6.81 7.93 34.10 0.27 7.08 16 15 O -0.48 -6.88 16.64 -19.35 -0.32 -7.21 16 16 C -0.06 -0.56 7.14 -36.97 -0.26 -0.83 16 17 C -0.05 -0.49 10.41 -39.01 -0.41 -0.90 16 18 C -0.24 -1.77 6.16 -104.97 -0.65 -2.42 16 19 C 0.56 4.14 8.33 34.44 0.29 4.43 16 20 O -0.51 -5.51 17.72 -19.28 -0.34 -5.85 16 21 O -0.51 -1.96 13.27 -40.62 -0.54 -2.49 16 22 C 0.09 0.48 11.98 30.62 0.37 0.85 16 23 O -0.13 -1.09 10.61 5.81 0.06 -1.03 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 26 H 0.07 1.34 8.14 -51.91 -0.42 0.91 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.18 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.42 -0.12 9.11 45.56 0.42 0.30 16 33 H 0.23 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -35.19 325.20 -5.16 -40.35 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.54 Total: -2.53 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.09 Total: -5.18 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.78 Total: -25.64 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.58 Total: -21.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.09 Total: -6.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.19 -5.16 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.406 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds