Wall clock time and date at job start Tue Mar 31 2020 07:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 120.00042 * 2 1 4 4 C 1.50690 * 109.47269 * 270.00356 * 3 2 1 5 5 H 1.08005 * 119.99796 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00005 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00174 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99979 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46981 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47017 * 119.99974 * 8 6 4 11 11 H 1.48500 * 109.46998 * 240.00087 * 8 6 4 12 12 C 1.38393 * 120.00233 * 179.97438 * 2 1 3 13 13 N 1.29855 * 124.84672 * 180.02562 * 12 2 1 14 14 C 1.31724 * 117.03249 * 179.97438 * 13 12 2 15 15 Cl 1.73602 * 122.85068 * 179.97438 * 14 13 12 16 16 C 1.34859 * 114.29820 * 0.02562 * 14 13 12 17 17 C 1.47810 * 126.02347 * 180.02562 * 16 14 13 18 18 N 1.33868 * 126.34393 * 180.02562 * 17 16 14 19 19 N 1.28556 * 109.83002 * 180.02562 * 18 17 16 20 20 N 1.28901 * 109.78558 * 359.97438 * 19 18 17 21 21 H 0.97002 * 126.40872 * 180.02562 * 20 19 18 22 22 N 1.32205 * 126.34305 * 359.69586 * 17 16 14 23 23 S 1.70945 * 124.84452 * 0.02562 * 12 2 1 24 24 H 1.09003 * 109.46771 * 269.99770 * 1 2 3 25 25 H 1.09001 * 109.47179 * 29.99616 * 1 2 3 26 26 H 1.08994 * 109.47290 * 150.00022 * 1 2 3 27 27 H 1.09002 * 109.46591 * 30.00168 * 3 2 1 28 28 H 1.08998 * 109.47039 * 149.99422 * 3 2 1 29 29 H 0.96996 * 120.00296 * 179.97438 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0959 -2.2416 6 6 3.1260 2.8781 -1.6726 7 7 3.5524 3.6187 -0.6730 8 14 3.4379 3.4171 -3.4338 9 1 2.8618 2.4160 -4.3672 10 1 2.7997 4.7374 -3.6678 11 1 4.9005 3.5259 -3.6665 12 6 2.1570 -1.1985 0.0005 13 7 3.4509 -1.3082 0.0011 14 6 3.9484 -2.5279 0.0021 15 17 5.6544 -2.8491 0.0022 16 6 3.0198 -3.5059 0.0018 17 6 3.2882 -4.9594 0.0033 18 7 2.3720 -5.9353 0.0026 19 7 2.9551 -7.0810 0.0049 20 7 4.2340 -6.9197 0.0065 21 1 4.9029 -7.6221 0.0080 22 7 4.4777 -5.5365 -0.0006 23 16 1.4304 -2.7458 0.0006 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.0293 4.4446 -0.8502 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604736715.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:27 Heat of formation + Delta-G solvation = 174.775850 kcal Electronic energy + Delta-G solvation = -18931.939853 eV Core-core repulsion = 15660.572982 eV Total energy + Delta-G solvation = -3271.366871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.09015 -39.46077 -36.80083 -35.90045 -33.82490 -32.91680 -32.71971 -29.36549 -28.22237 -26.51315 -24.64296 -24.06608 -22.78467 -21.80956 -19.45102 -18.93198 -17.74089 -16.69236 -16.49388 -16.24190 -15.11090 -14.94725 -14.89790 -14.26885 -14.06732 -13.59766 -13.21915 -12.44013 -12.27363 -12.14958 -11.62402 -11.51581 -11.38064 -11.34737 -11.05524 -10.97661 -10.78022 -10.74872 -10.53301 -10.25909 -9.91450 -9.20029 -9.12181 -8.83949 -8.55726 -7.11500 -6.15457 -4.22877 0.58007 1.14196 1.17483 1.53254 2.17812 2.44397 2.47093 3.21835 3.23706 3.32275 3.35148 3.46913 3.84414 4.34617 4.39689 5.12216 5.18131 5.33884 5.49611 5.56225 5.61947 5.79757 5.93357 6.49631 6.53202 7.17312 7.36102 7.63266 7.79968 8.02794 8.13600 8.17700 8.79904 9.42592 10.90844 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.004471 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.730846 B = 6261.162364 C = 6989.356947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.538 5.538 3 C 0.249 3.751 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.361 3.639 13 N -0.540 5.540 14 C 0.251 3.749 15 Cl 0.005 6.995 16 C -0.264 4.264 17 C 0.311 3.689 18 N -0.302 5.302 19 N 0.005 4.995 20 N -0.305 5.305 21 H 0.467 0.533 22 N -0.284 5.284 23 S 0.158 5.842 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -15.706 2.749 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.249 5.249 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.207 1.207 12 C -0.010 4.010 13 N -0.267 5.267 14 C 0.080 3.920 15 Cl 0.033 6.967 16 C -0.394 4.394 17 C 0.030 3.970 18 N -0.181 5.181 19 N 0.008 4.992 20 N -0.152 5.152 21 H 0.321 0.679 22 N -0.128 5.128 23 S 0.407 5.593 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.318 -15.724 2.796 16.312 hybrid contribution 2.055 0.284 -1.030 2.316 sum -1.263 -15.440 1.766 15.592 Atomic orbital electron populations 1.21899 0.78330 1.03748 1.01873 1.47082 1.05352 1.03216 1.69257 1.19657 0.92787 0.76375 0.98282 1.21375 1.37267 1.06533 0.91761 0.92199 1.24900 0.95068 0.96216 0.97564 1.69923 1.37945 1.14298 1.30751 0.86424 0.78226 0.78361 0.84336 1.19745 1.20891 1.20748 1.23504 0.90359 0.92604 0.94542 1.65880 1.09737 1.21733 1.29329 1.20235 0.88308 0.87130 0.96337 1.98396 1.08228 1.93988 1.96090 1.21300 0.95818 0.89770 1.32488 1.21919 0.86093 0.93048 0.95977 1.75554 1.27435 0.93182 1.21945 1.78219 0.91907 1.19611 1.09430 1.51001 1.06047 1.07139 1.51015 0.67899 1.79234 1.20380 0.86775 1.26424 1.83734 1.04694 0.95821 1.75097 0.92089 0.88851 0.91930 0.94030 0.92803 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.40 59.85 0.62 1.82 15 2 N -0.54 -10.44 2.96 -185.34 -0.55 -10.99 15 3 C 0.25 5.94 5.28 -5.19 -0.03 5.91 15 4 C -0.53 -14.00 9.39 -34.44 -0.32 -14.32 15 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 15 6 C 0.07 1.77 5.46 -17.82 -0.10 1.68 15 7 N -0.89 -25.12 13.29 55.43 0.74 -24.39 15 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 12 C 0.36 6.96 7.73 -87.75 -0.68 6.28 15 13 N -0.54 -11.50 9.78 -12.08 -0.12 -11.62 15 14 C 0.25 4.75 7.35 -18.80 -0.14 4.62 15 15 Cl 0.00 0.08 27.56 -51.86 -1.43 -1.35 15 16 C -0.26 -4.57 6.51 -36.87 -0.24 -4.81 15 17 C 0.31 4.99 8.11 -156.39 -1.27 3.72 15 18 N -0.30 -4.63 12.35 32.04 0.40 -4.24 15 19 N 0.00 0.06 13.42 60.35 0.81 0.87 15 20 N -0.31 -3.22 8.44 60.35 0.51 -2.71 15 21 H 0.47 2.56 8.96 -331.91 -2.98 -0.41 15 22 N -0.28 -4.07 11.34 32.05 0.36 -3.70 15 23 S 0.16 2.48 21.65 -107.50 -2.33 0.16 15 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.09 1.31 8.07 -51.93 -0.42 0.89 15 26 H 0.06 0.76 7.03 -51.93 -0.37 0.39 15 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 15 28 H 0.05 1.44 7.61 -51.93 -0.39 1.04 15 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -31.25 295.86 -8.86 -40.12 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -4.54 Total: -7.56 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.15 Total: 4.90 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 2.15 Total: -56.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.33 Total: 0.16 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.43 Total: -1.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.25 -8.86 -40.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604736715.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.892 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds