Wall clock time and date at job start Tue Mar 31 2020 07:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81002 * 109.47004 * 180.02562 * 11 10 9 13 13 C 1.76193 * 100.00049 * 180.02562 * 12 11 10 14 14 C 1.38987 * 120.18197 * 359.72480 * 13 12 11 15 15 C 1.38048 * 120.04997 * 179.74562 * 14 13 12 16 16 Cl 1.73605 * 119.78956 * 180.27649 * 15 14 13 17 17 C 1.38828 * 120.42528 * 0.51074 * 15 14 13 18 18 C 1.37652 * 120.36068 * 359.76622 * 17 15 14 19 19 C 1.39848 * 119.93595 * 359.97438 * 18 17 15 20 20 C 1.47185 * 120.20309 * 179.97438 * 19 18 17 21 21 O 1.21542 * 120.00112 * 180.02562 * 20 19 18 22 22 O 1.34788 * 120.00057 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.08000 * 119.96982 * 359.97438 * 14 13 12 31 31 H 1.07994 * 119.81899 * 179.74433 * 17 15 14 32 32 H 1.07994 * 120.03048 * 179.97438 * 18 17 15 33 33 H 0.96700 * 117.00038 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6562 -6.3629 -0.0019 13 6 1.5361 -7.7230 -0.0018 14 6 0.1645 -7.4986 0.0045 15 6 -0.7106 -8.5662 -0.0007 16 17 -2.4226 -8.2781 0.0000 17 6 -0.2306 -9.8688 -0.0016 18 6 1.1245 -10.1109 -0.0022 19 6 2.0247 -9.0406 -0.0024 20 6 3.4747 -9.2927 -0.0024 21 8 4.2538 -8.3598 -0.0021 22 8 3.9388 -10.5582 -0.0028 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 -0.2168 -6.4882 0.0098 31 1 -0.9240 -10.6967 -0.0015 32 1 1.4921 -11.1263 -0.0025 33 1 4.8989 -10.6737 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:50 Heat of formation + Delta-G solvation = -86.777315 kcal Electronic energy + Delta-G solvation = -18583.219510 eV Core-core repulsion = 15339.465684 eV Total energy + Delta-G solvation = -3243.753826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 300.037 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59467 -38.95824 -36.74193 -36.27864 -34.56729 -32.26815 -31.54135 -31.41211 -27.56221 -25.07589 -23.60888 -23.27897 -21.59068 -20.26892 -18.43663 -18.07801 -17.10383 -16.35340 -15.87387 -15.77556 -15.57634 -14.74236 -14.62567 -14.54238 -13.92553 -13.80953 -13.67729 -12.63352 -12.49612 -12.19305 -11.99688 -11.83051 -11.71361 -11.61907 -11.47913 -11.03608 -10.88668 -10.83888 -10.58168 -10.03187 -9.80607 -9.78957 -9.27186 -9.22067 -9.10780 -8.38117 -7.46298 -6.03253 -4.06072 0.20188 0.83163 1.54262 1.78298 2.22924 2.50093 2.83430 3.26658 3.32785 3.36936 3.39842 4.35378 4.44058 4.62192 4.81046 4.96015 4.99585 5.32160 5.36642 5.37272 5.48390 5.65341 5.74284 5.82566 6.04074 6.20147 6.24688 6.46131 6.62609 6.96065 7.60296 7.67027 7.71979 7.95067 8.36546 9.00004 9.58301 11.07989 Molecular weight = 300.04amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.003517 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.980652 B = 7960.025934 C = 9682.256928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.094 4.094 11 C -0.153 4.153 12 S 0.006 5.994 13 C -0.024 4.024 14 C -0.143 4.143 15 C 0.024 3.976 16 Cl -0.056 7.056 17 C -0.146 4.146 18 C -0.027 4.027 19 C -0.132 4.132 20 C 0.519 3.481 21 O -0.482 6.482 22 O -0.514 6.514 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -24.385 0.001 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.301 4.301 12 S 0.259 5.741 13 C -0.140 4.140 14 C -0.168 4.168 15 C -0.005 4.005 16 Cl -0.027 7.027 17 C -0.169 4.169 18 C -0.047 4.047 19 C -0.141 4.141 20 C 0.362 3.638 21 O -0.371 6.371 22 O -0.327 6.327 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.243 -23.695 0.000 23.727 hybrid contribution -0.640 0.816 0.001 1.037 sum 0.603 -22.879 0.001 22.887 Atomic orbital electron populations 1.69953 1.06067 1.26817 1.50608 1.25014 0.94864 0.99288 0.95182 0.86631 0.79573 0.82963 0.78699 1.20174 1.21261 1.20181 1.21181 0.93097 0.90871 1.50983 0.92581 1.19099 0.93742 0.90755 0.97482 1.21442 0.99172 0.91047 1.01653 1.24417 1.01728 0.98646 1.05268 1.87040 1.07812 0.93122 1.86086 1.22344 0.96885 0.97497 0.97263 1.21208 0.90697 1.00156 1.04755 1.21129 0.85385 0.94616 0.99388 1.98408 1.11394 1.96515 1.96379 1.20963 0.95826 0.95184 1.04895 1.21295 0.91729 0.98806 0.92869 1.18568 0.89997 0.92513 1.13045 1.20583 0.89264 0.80508 0.73437 1.90910 1.57628 1.43484 1.45035 1.84529 1.31773 1.30039 1.86334 0.92883 0.96356 0.96350 0.92256 0.92245 0.89557 0.89550 0.83045 0.84028 0.83344 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.58 16 10 C -0.09 -1.92 5.16 -26.73 -0.14 -2.06 16 11 C -0.15 -2.57 4.17 37.16 0.15 -2.42 16 12 S 0.01 0.09 18.97 -107.50 -2.04 -1.95 16 13 C -0.02 -0.33 6.16 -38.44 -0.24 -0.56 16 14 C -0.14 -1.81 8.95 -39.37 -0.35 -2.16 16 15 C 0.02 0.26 6.32 -39.43 -0.25 0.01 16 16 Cl -0.06 -0.59 28.94 -51.86 -1.50 -2.09 16 17 C -0.15 -1.30 9.80 -39.58 -0.39 -1.69 16 18 C -0.03 -0.25 9.61 -39.19 -0.38 -0.62 16 19 C -0.13 -1.57 5.89 -104.80 -0.62 -2.18 16 20 C 0.52 6.12 8.24 34.36 0.28 6.40 16 21 O -0.48 -7.17 14.55 -19.30 -0.28 -7.45 16 22 O -0.51 -4.03 12.68 -40.73 -0.52 -4.54 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.39 7.53 -51.91 -0.39 1.00 16 29 H 0.09 1.39 7.55 -51.92 -0.39 1.00 16 30 H 0.15 1.96 5.49 -52.49 -0.29 1.67 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.15 0.96 7.61 -52.49 -0.40 0.56 16 33 H 0.41 1.47 9.11 45.56 0.42 1.88 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -32.17 317.08 -9.02 -41.20 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -2.71 Total: -2.35 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.47 Total: -18.22 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.80 Total: -11.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.04 Total: -1.95 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.17 -9.02 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.580 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds