Wall clock time and date at job start Tue Mar 31 2020 07:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46748 * 2 1 4 4 C 1.50695 * 109.47410 * 239.99832 * 2 1 3 5 5 H 1.07997 * 120.00080 * 240.00064 * 4 2 1 6 6 C 1.37877 * 120.00088 * 59.99837 * 4 2 1 7 7 N 1.31520 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47269 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47449 * 120.00070 * 8 6 4 11 11 H 1.48510 * 109.46901 * 239.99866 * 8 6 4 12 12 N 1.46500 * 109.47090 * 119.99194 * 2 1 3 13 13 C 1.38391 * 120.00526 * 275.00354 * 12 2 1 14 14 N 1.29851 * 124.84711 * 359.97362 * 13 12 2 15 15 C 1.31718 * 117.03954 * 179.97438 * 14 13 12 16 16 Cl 1.73602 * 122.85489 * 180.02562 * 15 14 13 17 17 C 1.34867 * 114.29292 * 0.02562 * 15 14 13 18 18 C 1.47816 * 126.01921 * 180.02562 * 17 15 14 19 19 N 1.33864 * 126.34283 * 0.02562 * 18 17 15 20 20 N 1.28560 * 109.82522 * 180.02562 * 19 18 17 21 21 N 1.28907 * 109.78825 * 0.02562 * 20 19 18 22 22 H 0.96999 * 126.40610 * 180.02562 * 21 20 19 23 23 N 1.32202 * 126.33587 * 179.71002 * 18 17 15 24 24 S 1.70944 * 124.84660 * 180.28781 * 13 12 2 25 25 H 1.08996 * 109.47193 * 60.00333 * 1 2 3 26 26 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47420 * 300.00400 * 1 2 3 28 28 H 0.96996 * 119.99857 * 180.02562 * 7 6 4 29 29 H 0.97008 * 119.99359 * 95.00731 * 12 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 3.1467 -2.2871 -3.6036 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0183 -0.6904 1.1963 13 6 2.1505 0.0000 2.3883 14 7 1.8703 1.2572 2.5526 15 6 2.0534 1.7592 3.7565 16 17 1.7270 3.4196 4.1443 17 6 2.5159 0.8736 4.6625 18 6 2.8107 1.1569 6.0829 19 7 2.6677 2.3345 6.7033 20 7 3.0161 2.2233 7.9357 21 7 3.3913 1.0136 8.1757 22 1 3.7016 0.6650 9.0260 23 7 3.2590 0.2928 6.9774 24 16 2.7130 -0.6787 3.8530 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7090 1.1612 -3.4845 29 1 2.2491 -1.6317 1.1527 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609108709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:15 Heat of formation + Delta-G solvation = 166.101196 kcal Electronic energy + Delta-G solvation = -18770.272091 eV Core-core repulsion = 15498.529059 eV Total energy + Delta-G solvation = -3271.743032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 300.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.13369 -39.54080 -36.64724 -35.79702 -33.93882 -32.99529 -32.73090 -29.76849 -28.57406 -25.47017 -24.52259 -24.41286 -22.79978 -21.31797 -19.63125 -18.96077 -18.28259 -16.74027 -16.54789 -15.94423 -15.22879 -15.12693 -14.87379 -14.40259 -14.04209 -13.44351 -12.69362 -12.47977 -12.23548 -11.76604 -11.64930 -11.39393 -11.18759 -11.10378 -11.04141 -10.87006 -10.81878 -10.53093 -10.44595 -10.35358 -9.46677 -9.33062 -9.17648 -8.98548 -8.61302 -7.25423 -6.26157 -4.37099 0.48816 1.09069 1.12184 1.44905 2.08167 2.39938 2.40136 3.14141 3.16753 3.25120 3.27145 3.66174 3.92613 4.24997 4.41820 5.06993 5.14764 5.27368 5.56231 5.72648 6.44161 6.59265 6.82817 6.91482 7.06387 7.35451 7.48454 7.69334 7.91957 7.97327 8.11402 8.31163 8.68196 9.30174 10.79482 Molecular weight = 300.03amu Principal moments of inertia in cm(-1) A = 0.031783 B = 0.003677 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.776147 B = 7612.922827 C = 8220.193433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.064 0.936 6 C 0.070 3.930 7 N -0.879 5.879 8 Si 0.905 3.095 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.641 5.641 13 C 0.364 3.636 14 N -0.550 5.550 15 C 0.255 3.745 16 Cl 0.014 6.986 17 C -0.260 4.260 18 C 0.313 3.687 19 N -0.284 5.284 20 N 0.006 4.994 21 N -0.304 5.304 22 H 0.467 0.533 23 N -0.304 5.304 24 S 0.143 5.857 25 H 0.095 0.905 26 H 0.028 0.972 27 H 0.019 0.981 28 H 0.266 0.734 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -1.993 16.425 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.579 4.579 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.515 5.515 8 Si 0.732 3.268 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.272 5.272 13 C -0.009 4.009 14 N -0.279 5.279 15 C 0.085 3.915 16 Cl 0.042 6.958 17 C -0.390 4.390 18 C 0.032 3.968 19 N -0.163 5.163 20 N 0.009 4.991 21 N -0.150 5.150 22 H 0.321 0.679 23 N -0.149 5.149 24 S 0.391 5.609 25 H 0.113 0.887 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.456 -2.118 16.386 16.880 hybrid contribution 0.314 -0.266 -0.493 0.642 sum 3.771 -2.384 15.893 16.507 Atomic orbital electron populations 1.22119 0.97696 0.99452 1.01443 1.19128 0.91486 0.94258 0.78502 0.92251 1.21165 1.33157 1.13651 0.89958 0.91800 1.24863 0.94612 0.94903 0.99080 1.69897 1.35346 1.22147 1.24144 0.86339 0.78653 0.79506 0.82295 1.19685 1.20753 1.20743 1.45530 1.63774 1.12118 1.05752 1.23641 0.93540 0.90715 0.93008 1.65935 1.31027 1.10106 1.20782 1.20282 0.94502 0.89191 0.87512 1.98417 1.93207 1.11932 1.92199 1.21193 1.27816 0.97583 0.92438 1.21917 0.94882 0.87098 0.92922 1.75721 1.20916 1.22148 0.97505 1.78313 1.06867 1.02721 1.11173 1.50900 1.46349 1.05226 1.12572 0.67900 1.79002 1.25861 1.18648 0.91392 1.83855 1.67137 1.09213 1.00730 0.88656 0.95284 0.96186 0.92355 0.75320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.27 37.16 0.34 -3.05 15 2 C 0.27 6.23 2.69 -69.08 -0.19 6.04 15 3 H 0.06 1.58 7.76 -51.92 -0.40 1.17 15 4 C -0.54 -13.33 8.73 -34.44 -0.30 -13.63 15 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -23.42 11.32 55.43 0.63 -22.79 15 8 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 15 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 12 N -0.64 -12.08 5.21 -56.94 -0.30 -12.38 15 13 C 0.36 6.59 8.04 -87.76 -0.71 5.88 15 14 N -0.55 -10.90 9.87 -12.08 -0.12 -11.02 15 15 C 0.26 4.58 7.35 -18.80 -0.14 4.44 15 16 Cl 0.01 0.23 27.55 -51.86 -1.43 -1.20 15 17 C -0.26 -4.28 6.51 -36.86 -0.24 -4.52 15 18 C 0.31 4.82 8.10 -156.39 -1.27 3.55 15 19 N -0.28 -4.29 10.76 32.04 0.34 -3.95 15 20 N 0.01 0.07 13.42 60.35 0.81 0.88 15 21 N -0.30 -3.01 8.44 60.35 0.51 -2.50 15 22 H 0.47 2.25 8.96 -331.90 -2.98 -0.73 15 23 N -0.30 -4.07 12.92 32.05 0.41 -3.65 15 24 S 0.14 2.10 23.20 -107.50 -2.49 -0.39 15 25 H 0.09 2.41 6.07 -51.93 -0.32 2.09 15 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 29 H 0.41 6.63 8.66 -40.82 -0.35 6.28 15 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -28.63 293.33 -9.25 -37.89 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.43 Total: -0.38 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.59 Total: 0.40 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 2.29 Total: -55.41 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.49 Total: -0.39 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.43 Total: -1.20 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.63 -9.25 -37.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609108709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.987 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds